PDBsum entry 3vs1 Go to PDB code:  Tunnel analysis for: 3vs1 calculated with MOLE 2.0 PDB id 3vs1 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.84 22.7 -0.25 -0.11 11.4 72 2 3 1 4 3 0 0   2 1.11 1.89 29.3 1.19 0.40 8.1 73 1 2 0 8 4 0 0  VSA 602 B 3 1.15 1.87 34.6 1.44 0.66 5.5 71 1 2 1 9 5 0 0  VSA 602 B 4 1.13 1.85 37.9 0.39 0.14 12.4 78 2 2 1 12 3 0 0  VSA 602 B 5 1.15 2.43 20.6 1.59 0.80 4.0 78 0 1 1 6 1 0 0  VSA 602 A 6 1.69 1.69 24.6 0.15 0.05 12.9 87 2 1 1 7 0 0 0  VSA 602 A 7 1.26 1.26 27.7 1.09 0.21 4.5 80 0 1 0 10 2 1 0  VSA 602 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.