PDBsum entry 3vrz

Pore analysis for: 3vrz calculated with

MOLE 2.0

PDB id

3vrz

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

9 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

3.25

3.26

26.4

-1.04

-0.67

6.9

92

2

1

4

3

0

1

0

2

2.13

3.41

31.0

-1.45

-0.70

18.5

94

0

5

6

3

0

0

0

3

1.83

2.17

38.4

-1.30

-0.33

11.7

76

3

3

3

2

1

3

0

4

1.96

3.78

47.5

-1.38

-0.50

18.1

84

4

8

5

2

1

1

0

5

1.79

1.79

49.9

0.03

-0.24

10.8

85

3

3

6

9

1

0

0

VRZ 603 A

6

1.06

1.39

50.4

-1.82

-0.70

17.9

84

3

3

6

3

1

1

0

7

2.15

2.61

52.5

-1.03

-0.29

8.2

75

2

2

3

2

3

2

0

8

1.22

1.28

60.8

-0.29

-0.24

14.8

82

4

5

5

11

2

1

0

VRZ 603 A

9

1.74

1.76

63.1

-0.87

-0.26

12.8

83

7

6

7

5

2

2

0

10

1.07

1.38

65.9

-2.36

-0.78

26.8

83

5

8

5

1

1

1

0

11

1.92

1.92

72.2

-1.35

-0.39

18.6

79

3

6

4

5

2

2

0

12

2.56

4.49

77.0

-0.84

-0.33

16.9

80

5

7

4

7

2

2

0

VRZ 603 A

13

1.88

1.87

78.7

-0.66

-0.21

9.4

79

4

4

6

6

3

3

0

14

1.08

1.36

80.8

-1.48

-0.44

18.3

82

8

6

7

4

2

2

0

15

1.10

1.36

96.4

-1.27

-0.40

15.0

77

5

4

6

5

3

3

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.