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PDBsum entry 3vkh
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Tunnel analysis for: 3vkh calculated with  MOLE 2.0
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PDB id
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3vkh
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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12 tunnels,
coloured by tunnel radius |
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11 tunnels,
coloured by
tunnel radius
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11 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.18 |
1.29 |
37.0 |
-1.26 |
-0.13 |
19.5 |
82 |
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6 |
4 |
4 |
7 |
2 |
0 |
0 |
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2 |
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1.18 |
1.28 |
50.5 |
-1.54 |
-0.37 |
17.4 |
81 |
10 |
6 |
5 |
12 |
3 |
1 |
0 |
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3 |
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1.19 |
1.30 |
52.8 |
-0.97 |
-0.12 |
18.4 |
82 |
7 |
5 |
4 |
10 |
3 |
0 |
1 |
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4 |
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1.27 |
1.55 |
15.3 |
-0.07 |
0.14 |
8.3 |
74 |
0 |
3 |
2 |
6 |
2 |
0 |
0 |
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5 |
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1.25 |
1.87 |
21.0 |
-0.74 |
-0.04 |
9.2 |
72 |
1 |
2 |
2 |
3 |
3 |
0 |
0 |
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6 |
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1.18 |
1.36 |
15.4 |
0.48 |
0.20 |
7.1 |
70 |
5 |
0 |
0 |
6 |
2 |
1 |
1 |
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7 |
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1.19 |
2.59 |
16.2 |
3.73 |
1.35 |
0.4 |
87 |
0 |
0 |
1 |
11 |
1 |
0 |
0 |
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8 |
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1.17 |
1.37 |
23.0 |
1.90 |
0.85 |
9.3 |
84 |
2 |
1 |
0 |
8 |
1 |
0 |
0 |
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9 |
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1.14 |
1.93 |
33.7 |
0.61 |
0.40 |
3.7 |
80 |
4 |
3 |
4 |
8 |
5 |
0 |
0 |
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10 |
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1.08 |
2.14 |
33.9 |
0.63 |
0.41 |
3.7 |
80 |
4 |
3 |
3 |
8 |
6 |
0 |
0 |
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11 |
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1.24 |
1.40 |
15.3 |
0.88 |
0.41 |
4.5 |
71 |
0 |
2 |
2 |
5 |
4 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program