PDBsum entry 3vgv Go to PDB code:  Pore analysis for: 3vgv calculated with MOLE 2.0 PDB id 3vgv Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   21 pores, coloured by radius 21 pores, coloured by radius 21 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.70 1.70 28.7 -1.42 -0.64 13.7 72 1 4 4 2 0 0 1   2 1.94 1.94 31.0 -1.09 -0.54 12.4 73 1 4 5 2 1 0 1   3 1.90 2.04 36.7 -1.84 -0.61 27.6 71 3 5 4 3 0 0 1   4 1.35 1.51 38.3 -2.62 -0.41 35.2 84 5 4 0 1 1 0 0   5 1.70 1.69 39.6 -1.84 -0.60 27.1 70 3 6 5 4 0 0 2   6 1.91 2.04 40.4 -1.96 -0.59 28.1 77 4 5 6 3 1 0 0   7 1.71 1.71 43.3 -1.92 -0.60 25.4 75 4 6 7 4 1 0 1   8 1.70 1.77 45.0 -2.37 -0.72 26.9 78 5 7 8 4 1 0 1   9 2.14 2.47 54.7 -1.95 -0.66 24.2 76 5 8 7 4 0 0 1   10 1.69 1.83 54.7 -1.41 -0.51 17.4 83 4 5 6 7 1 0 0   11 1.51 1.50 59.5 -2.12 -0.67 23.8 72 5 7 7 5 1 2 2   12 2.17 2.41 62.3 -2.21 -0.71 26.0 77 6 8 11 5 1 0 2   13 1.67 1.80 62.5 -1.88 -0.66 23.0 77 6 8 8 3 1 0 1   14 1.78 2.45 70.0 -2.41 -0.75 29.6 86 6 8 5 2 0 1 0   15 3.70 4.43 70.3 -2.08 -0.82 17.4 87 5 7 6 2 0 0 0   16 1.51 2.66 72.9 -2.20 -0.62 25.5 81 6 9 6 3 1 0 0   17 2.68 2.83 75.4 -1.63 -0.59 23.2 82 5 10 2 4 3 2 0   18 1.51 1.50 82.0 -2.24 -0.72 26.9 80 8 12 12 5 2 0 1   19 1.49 1.60 81.7 -1.91 -0.69 23.6 78 5 11 12 6 3 0 2   20 1.35 1.34 83.5 -1.98 -0.86 17.5 86 5 5 8 1 0 0 1   21 1.18 3.24 184.9 -2.34 -0.71 29.5 85 12 14 9 5 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.