PDBsum entry 3vb9 Go to PDB code:  Pore analysis for: 3vb9 calculated with MOLE 2.0 PDB id 3vb9 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.20 41.6 0.97 0.14 6.8 86 2 3 3 10 1 1 0  MSE 88 A MSE 131 A 2 1.15 1.15 50.7 0.19 0.11 17.1 88 2 2 3 5 1 0 0  MSE 48 A 3 1.27 1.29 111.1 -0.95 -0.27 15.1 83 8 8 9 10 4 0 0  MSE 352 A MG 501 A MSE 45 B MSE 48 B 4 1.14 1.14 128.6 -0.71 -0.28 12.7 82 8 8 7 11 6 0 0  MSE 88 A MSE 134 A MSE 135 A MSE 352 A MSE 45 B MSE 48 B 5 1.53 1.71 26.7 -0.79 -0.09 11.7 79 2 4 1 3 1 2 0   6 1.97 1.97 29.4 -0.24 -0.40 9.1 78 3 1 2 5 0 0 0  MSE 297 C MSE 48 D MSE 52 D 7 1.27 2.78 33.7 -0.11 -0.10 9.1 75 4 1 2 5 2 0 0  MSE 352 D MG 501 D 8 1.16 1.18 50.0 -0.29 -0.25 8.9 82 4 2 2 6 2 0 0  MSE 88 D MSE 134 D MSE 135 D MSE 352 D 9 1.16 1.19 54.5 0.19 -0.24 6.7 78 3 2 3 9 2 0 0  MSE 88 D MSE 134 D MSE 135 D MG 501 D 10 1.27 2.01 59.3 -1.00 -0.32 20.3 80 5 5 5 5 1 0 0  MSE 48 C MSE 52 C MSE 297 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.