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PDBsum entry 3v94

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3v94 calculated with MOLE 2.0 PDB id
3v94
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 29 pores, coloured by radius 29 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.82 5.35 37.6 -1.54 -0.35 20.4 82 8 2 4 4 1 0 0  
2 1.57 1.57 39.0 -2.09 -0.60 22.2 85 5 3 4 4 1 1 0  
3 1.64 1.74 40.3 -1.39 -0.60 11.5 88 4 1 5 6 1 1 0  
4 1.61 1.61 41.7 -1.60 -0.61 16.6 83 4 2 5 3 3 0 0  WYQ 701 D
5 2.27 2.36 44.8 -1.09 -0.46 20.8 83 6 6 2 6 1 1 1  
6 2.20 2.28 46.1 -1.59 -0.61 24.0 87 7 6 3 6 0 1 0  
7 2.20 2.27 47.8 -1.01 -0.47 18.4 86 8 6 3 10 2 0 0  
8 2.17 2.17 51.5 -1.09 -0.49 19.0 85 9 4 4 7 1 1 1  
9 2.20 2.28 52.4 -1.40 -0.57 22.3 88 8 5 3 9 0 1 0  
10 2.34 2.33 53.7 -1.86 -0.42 20.1 75 7 6 2 2 0 6 0  
11 2.16 2.16 54.9 -0.82 -0.45 16.1 87 10 5 4 11 2 0 0  
12 2.04 5.06 54.6 -1.74 -0.48 20.6 83 6 3 5 5 3 2 0  
13 3.12 3.13 54.6 -1.76 -0.55 26.1 87 6 6 3 7 0 2 1  
14 2.20 2.27 56.2 -1.38 -0.49 21.7 89 7 6 4 9 1 1 0  
15 2.19 2.22 56.4 -1.01 -0.47 16.6 83 7 5 4 6 1 4 0  
16 1.68 1.79 58.0 -1.69 -0.42 20.7 85 7 3 5 5 1 2 0  
17 2.18 2.18 58.9 -1.12 -0.48 17.2 84 8 4 4 7 1 4 0  
18 2.69 2.88 59.7 -1.55 -0.47 23.5 80 7 6 3 5 0 5 2  
19 1.54 1.88 62.9 -1.17 -0.44 14.9 80 5 4 3 6 2 6 1  WYQ 701 E
20 1.68 3.87 65.7 -1.32 -0.52 17.9 85 11 5 6 9 2 0 1  
21 1.69 3.85 67.6 -1.73 -0.53 20.9 79 9 7 5 4 1 4 2  
22 1.66 1.70 70.8 -1.42 -0.43 15.0 79 9 3 6 4 3 4 0  
23 1.68 1.80 73.9 -1.20 -0.47 16.9 85 9 4 7 8 2 0 1  
24 2.28 2.37 80.6 -1.34 -0.52 21.2 86 7 8 4 10 2 3 0  WYQ 701 E
25 1.67 1.80 83.6 -1.61 -0.52 20.3 89 9 4 8 9 1 1 0  
26 2.09 4.82 85.7 -1.43 -0.49 18.9 83 15 6 7 8 4 0 0  
27 1.54 1.81 87.0 -1.68 -0.53 19.3 80 9 7 5 6 2 4 1  
28 1.55 1.57 92.6 -1.34 -0.57 18.2 85 9 8 4 10 0 5 0  
29 0.93 3.41 140.8 -1.88 -0.50 23.6 81 14 5 7 5 5 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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