spacer
spacer

PDBsum entry 3v47

Go to PDB code: 
protein ligands Protein-protein interface(s) links
Immune system PDB id
3v47

 

 

 

 

Loading ...

 
JSmol PyMol  
Contents
Protein chains
441 a.a.
295 a.a.
Ligands
NAG-NAG ×4
NAG ×3
Waters ×291
PDB id:
3v47
Name: Immune system
Title: Crystal structure of the n-terminal fragment of zebrafish tlr5 in complex with salmonella flagellin
Structure: Toll-like receptor 5b and variable lymphocyte receptor b.61 chimeric protein. Chain: a, b. Fragment: zebrafish toll-like receptor 5b (unp residues 22-390), hagfish variable lymphocyte receptor b.61 (unp residues 126-200). Engineered: yes. Mutation: yes. Flagellin. Chain: c, d.
Source: Danio rerio, eptatretus burgeri. Zebra fish, inshore hagfish. Organism_taxid: 7955, 7764. Expressed in: trichoplusia ni. Expression_system_taxid: 7111. Expression_system_cell_line: hi5. Salmonella enterica subsp. Enterica serovar dublin. Organism_taxid: 98360.
Resolution:
2.47Å     R-factor:   0.223     R-free:   0.259
Authors: S.I.Yoon,H.Hong,I.A.Wilson
Key ref: S.I.Yoon et al. (2012). Structural basis of TLR5-flagellin recognition and signaling. Science, 335, 859-864. PubMed id: 22344444
Date:
14-Dec-11     Release date:   29-Feb-12    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
B3DIN1  (B3DIN1_DANRE) -  Tlr5b protein from Danio rerio
Seq:
Struc:
 
Seq:
Struc:
875 a.a.
441 a.a.*
Protein chains
Pfam   ArchSchema ?
Q4G1L2  (Q4G1L2_EPTBU) -  Variable lymphocyte receptor B from Eptatretus burgeri
Seq:
Struc:
273 a.a.
441 a.a.*
Protein chains
Pfam   ArchSchema ?
Q06971  (FLIC_SALDU) -  Flagellin from Salmonella dublin
Seq:
Struc:
505 a.a.
295 a.a.
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 166 residue positions (black crosses)

 

 
Science 335:859-864 (2012)
PubMed id: 22344444  
 
 
Structural basis of TLR5-flagellin recognition and signaling.
S.I.Yoon, O.Kurnasov, V.Natarajan, M.Hong, A.V.Gudkov, A.L.Osterman, I.A.Wilson.
 
  ABSTRACT  
 
No abstract given.

 

 

spacer

spacer