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PDBsum entry 3uzs

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 3uzs calculated with MOLE 2.0 PDB id
3uzs
Pores calculated on whole structure Pores calculated excluding ligands

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9 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.31 2.97 26.4 1.03 0.22 6.5 78 1 2 1 5 0 1 0  
2 1.24 1.99 61.3 0.55 0.07 7.0 68 3 0 1 6 4 2 0  C 48 C A 49 C G 54 C G 55 C
3 1.22 1.33 97.3 -0.75 -0.15 16.7 78 5 5 6 10 3 4 2  
4 1.40 2.50 128.7 -1.98 -0.36 25.9 81 10 5 3 5 1 0 0  G 45 C A 46 C C 47 C C 48 C U 50 C C 52 C G 53 C
5 1.40 2.50 185.3 -0.79 -0.19 16.4 76 12 4 5 10 4 2 0  C 52 C G 53 C G 54 C G 55 C
6 1.32 1.54 211.4 -1.60 -0.27 25.3 77 19 13 11 13 5 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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