spacer
spacer

PDBsum entry 3uqa

Go to PDB code: 
Top Page protein ligands metals tunnels links
Tunnel analysis for: 3uqa calculated with MOLE 2.0 PDB id
3uqa
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.07 7.9 -1.65 -0.70 24.6 85 2 2 1 1 0 0 0  
2 2.00 12.9 -0.74 -0.32 23.4 85 2 2 0 1 0 0 0  
3 1.53 33.2 -0.68 -0.20 20.1 86 4 2 1 3 0 0 0  
4 2.02 5.0 -1.22 -0.73 17.9 84 1 2 0 1 0 0 0  
5 1.44 8.1 0.93 0.64 8.2 77 0 1 0 4 2 1 0  114 FK5 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer