spacer
spacer

PDBsum entry 3un8

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3un8 calculated with MOLE 2.0 PDB id
3un8
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.58 1.78 29.1 -0.76 -0.17 17.8 80 5 4 1 4 2 0 0  
2 1.91 3.91 43.9 -2.86 -0.70 27.9 85 5 5 6 1 1 1 0  
3 1.65 1.65 50.8 -1.79 -0.32 29.2 78 5 5 2 4 0 1 0  
4 1.37 1.37 73.5 -0.74 -0.14 17.6 80 9 5 3 7 2 1 0  
5 1.78 2.58 80.9 -2.81 -0.46 31.0 76 10 9 4 2 6 0 0  
6 1.24 1.24 92.0 -1.40 -0.24 19.9 79 7 6 6 7 5 1 0  
7 1.23 1.23 99.8 -1.76 -0.27 24.4 79 10 8 5 5 6 1 0  
8 1.41 1.42 102.7 -2.09 -0.37 27.2 81 13 10 7 6 6 0 0  
9 1.42 1.47 116.1 -1.98 -0.36 25.4 81 12 10 9 7 7 0 0  
10 1.68 2.21 128.4 -2.02 -0.51 21.8 89 13 5 13 5 2 1 0  
11 1.24 1.31 150.3 -1.45 -0.40 14.6 83 11 6 18 8 7 2 0  
12 1.86 1.96 155.7 -1.68 -0.29 22.1 77 19 9 11 9 11 3 0  
13 1.21 1.26 156.2 -1.54 -0.32 23.8 81 15 11 10 10 8 1 0  
14 1.80 1.88 161.2 -1.51 -0.25 19.8 78 14 8 12 11 11 3 0  
15 1.34 1.35 165.5 -1.99 -0.44 22.8 81 21 10 12 5 7 3 1  
16 1.58 1.59 159.9 -2.27 -0.55 28.3 90 11 6 8 6 0 0 0  
17 1.68 1.89 167.4 -1.81 -0.42 17.8 82 15 9 16 7 6 1 1  
18 1.51 2.22 181.1 -2.02 -0.41 19.3 81 15 8 14 7 9 0 1  
19 1.74 1.99 185.9 -2.81 -0.46 31.9 79 24 13 9 6 8 1 0  
20 2.38 3.58 185.3 -2.41 -0.47 23.5 80 13 8 13 7 10 1 0  
21 1.49 1.97 188.1 -2.27 -0.45 22.6 82 22 8 13 6 6 0 1  
22 2.34 3.66 192.3 -2.69 -0.51 26.8 81 20 8 12 6 8 1 0  
23 1.21 1.34 198.6 -1.42 -0.27 20.9 77 19 10 11 12 11 4 0  
24 1.51 1.51 209.4 -1.84 -0.43 20.6 84 20 10 17 10 8 0 1  
25 1.20 1.30 210.2 -2.27 -0.47 22.0 81 19 11 16 10 9 0 0  
26 1.14 1.15 217.2 -2.52 -0.51 25.0 82 26 11 15 9 6 0 0  
27 1.25 1.26 237.1 -2.38 -0.53 23.5 82 22 10 16 5 9 3 0  
28 1.56 2.50 246.4 -1.44 -0.30 16.4 80 21 8 20 12 13 3 1  
29 1.26 2.29 249.2 -2.26 -0.41 25.2 82 29 12 18 11 10 2 0  
30 1.53 2.31 287.9 -2.41 -0.46 25.9 82 34 14 17 9 9 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer