PDBsum entry 3ug1 Go to PDB code:  Tunnel analysis for: 3ug1 calculated with MOLE 2.0 PDB id 3ug1 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.54 25.1 0.21 0.09 13.4 86 3 1 2 5 0 0 1   2 1.22 1.54 25.9 1.79 0.44 4.5 80 1 0 1 6 0 0 1   3 1.45 1.46 16.2 -1.52 -0.69 20.1 80 1 1 0 3 0 0 0   4 1.60 1.60 20.7 -0.47 -0.36 12.4 75 2 0 0 3 0 0 0   5 1.48 1.48 26.1 -0.95 -0.42 17.4 84 2 1 0 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.