PDBsum entry 3udb Go to PDB code:  Pore analysis for: 3udb calculated with MOLE 2.0 PDB id 3udb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   18 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.64 1.64 27.2 -2.15 -0.80 19.8 88 1 4 4 2 0 0 0   2 1.64 1.64 34.4 -2.20 -0.85 18.5 90 1 4 5 1 0 0 0   3 1.92 2.80 39.1 -2.45 -0.84 26.1 85 1 4 3 1 1 1 0   4 1.24 1.46 42.8 -1.12 -0.25 24.9 80 6 4 2 5 2 0 0   5 1.54 2.05 52.1 -0.87 -0.30 19.3 86 4 6 1 3 0 1 0   6 1.53 2.05 54.7 -1.91 -0.63 24.1 86 4 6 2 1 0 1 0   7 1.90 2.83 55.8 -2.10 -0.71 22.4 82 2 6 5 4 0 0 1   8 1.55 2.05 63.0 -2.23 -0.64 26.1 85 5 7 3 1 0 1 0   9 1.90 2.83 65.8 -0.79 -0.33 18.6 78 4 7 2 6 0 1 1   10 1.91 2.83 67.7 -2.36 -0.70 27.4 81 4 8 4 3 0 0 1   11 1.53 2.04 74.8 -1.65 -0.53 20.7 84 4 8 3 5 0 1 1   12 2.02 3.74 130.7 -1.88 -0.42 23.4 83 11 10 6 9 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.