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PDBsum entry 3ubg
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Tunnel analysis for: 3ubg calculated with  MOLE 2.0
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PDB id
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3ubg
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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21 tunnels,
coloured by tunnel radius |
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23 tunnels,
coloured by
tunnel radius
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23 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.77 |
1.96 |
15.9 |
-0.80 |
-0.47 |
14.0 |
92 |
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2 |
0 |
1 |
3 |
0 |
0 |
0 |
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2 |
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1.57 |
1.84 |
16.3 |
-1.00 |
-0.49 |
15.9 |
92 |
2 |
0 |
1 |
3 |
0 |
0 |
0 |
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3 |
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1.08 |
1.44 |
19.3 |
-1.32 |
-0.18 |
27.0 |
76 |
4 |
2 |
0 |
2 |
1 |
1 |
0 |
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4 |
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1.15 |
1.72 |
24.6 |
-0.61 |
-0.28 |
17.0 |
82 |
4 |
2 |
0 |
3 |
1 |
0 |
0 |
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5 |
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1.18 |
1.66 |
25.9 |
-0.63 |
-0.28 |
17.3 |
81 |
5 |
2 |
0 |
3 |
1 |
0 |
0 |
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6 |
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1.08 |
1.42 |
26.0 |
-0.68 |
-0.29 |
13.3 |
78 |
2 |
1 |
2 |
2 |
2 |
2 |
0 |
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7 |
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1.76 |
1.96 |
26.2 |
-1.09 |
-0.16 |
12.7 |
77 |
3 |
2 |
0 |
3 |
3 |
0 |
0 |
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8 |
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1.64 |
1.87 |
26.6 |
-1.22 |
-0.19 |
14.1 |
76 |
3 |
2 |
0 |
3 |
3 |
1 |
0 |
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9 |
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1.76 |
1.96 |
26.8 |
-0.64 |
0.00 |
10.8 |
78 |
3 |
1 |
0 |
3 |
2 |
1 |
0 |
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10 |
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1.66 |
1.93 |
27.3 |
-0.74 |
-0.01 |
11.8 |
78 |
3 |
1 |
0 |
3 |
2 |
1 |
0 |
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11 |
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1.07 |
1.42 |
28.3 |
-0.38 |
-0.15 |
15.6 |
81 |
3 |
1 |
0 |
5 |
1 |
2 |
0 |
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12 |
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1.08 |
1.43 |
28.9 |
-0.76 |
-0.27 |
13.6 |
79 |
2 |
0 |
1 |
3 |
0 |
2 |
0 |
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13 |
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1.76 |
1.96 |
29.5 |
-1.52 |
-0.49 |
8.9 |
87 |
2 |
2 |
4 |
3 |
2 |
0 |
0 |
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14 |
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1.66 |
1.92 |
30.0 |
-1.52 |
-0.49 |
10.4 |
87 |
2 |
2 |
4 |
3 |
2 |
0 |
0 |
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15 |
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1.08 |
1.43 |
31.9 |
-0.07 |
-0.23 |
10.2 |
89 |
3 |
1 |
1 |
4 |
0 |
1 |
0 |
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16 |
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1.77 |
1.96 |
32.5 |
-1.68 |
-0.20 |
21.2 |
78 |
5 |
1 |
0 |
3 |
3 |
1 |
0 |
ZN 1 A
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17 |
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1.58 |
1.85 |
33.0 |
-1.70 |
-0.21 |
21.0 |
78 |
5 |
1 |
0 |
3 |
3 |
1 |
0 |
ZN 1 A
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18 |
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1.14 |
1.72 |
34.9 |
-0.04 |
-0.23 |
10.9 |
84 |
4 |
1 |
0 |
6 |
1 |
1 |
0 |
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19 |
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1.14 |
1.63 |
38.2 |
-0.23 |
-0.30 |
9.5 |
85 |
3 |
1 |
1 |
6 |
1 |
1 |
0 |
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20 |
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1.13 |
1.78 |
39.5 |
-0.25 |
-0.30 |
9.8 |
84 |
4 |
1 |
1 |
6 |
1 |
1 |
0 |
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21 |
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1.09 |
1.42 |
45.6 |
-0.85 |
-0.35 |
8.6 |
87 |
3 |
3 |
4 |
4 |
2 |
1 |
0 |
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22 |
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1.13 |
1.66 |
52.5 |
-0.24 |
-0.26 |
10.7 |
84 |
3 |
3 |
1 |
7 |
1 |
1 |
0 |
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23 |
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1.39 |
1.39 |
16.4 |
0.07 |
-0.02 |
9.7 |
68 |
1 |
1 |
1 |
2 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program