PDBsum entry 3u61 Go to PDB code:  Pore analysis for: 3u61 calculated with MOLE 2.0 PDB id 3u61 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   31 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.56 2.22 43.6 -0.83 -0.16 8.1 76 2 3 2 5 3 5 0   2 2.67 2.90 46.7 -1.82 -0.53 20.8 81 6 6 3 3 1 2 0   3 1.73 3.21 47.9 -0.68 -0.35 14.6 84 4 7 3 4 2 2 0   4 2.70 2.70 48.1 -0.94 -0.25 18.4 81 3 4 3 3 1 1 0  DA 8 I DT 3 J DA 4 J 5 2.68 3.82 50.1 -1.92 -0.47 23.6 83 6 5 5 4 2 1 0  DA 8 I DT 3 J 6 1.47 1.80 50.4 -1.68 -0.34 19.3 85 6 4 4 1 2 1 0   7 3.05 3.21 52.0 -1.56 -0.45 17.2 83 6 5 6 5 1 4 0   8 2.69 2.92 58.0 -1.98 -0.52 23.4 81 7 7 4 4 2 3 0   9 3.09 5.34 58.2 -2.08 -0.67 22.7 90 3 6 6 1 1 0 0  DA 8 I DT 3 J DA 4 J DG 5 J DA 6 J DC 7 J DA 8 J 10 2.43 2.66 59.9 -1.36 -0.49 19.6 87 5 5 5 5 1 0 0   11 1.73 3.21 62.8 -1.63 -0.28 24.5 83 9 8 5 5 4 3 0   12 1.72 1.93 64.6 -0.93 -0.26 11.2 85 3 3 8 6 2 3 0  DA 8 I DT 3 J 13 1.54 1.68 65.2 -1.16 -0.32 13.0 79 4 5 6 10 4 4 0  MSE 3022 F MSE 3030 F DA 8 I DT 3 J 14 1.46 1.68 68.1 -1.63 -0.36 21.8 85 9 7 6 5 2 3 0   15 2.47 2.72 70.5 -1.37 -0.24 17.9 82 8 6 6 5 3 3 0  DG 1 I DA 8 I DT 3 J DA 4 J DG 5 J 16 2.17 2.15 74.9 -1.11 -0.16 16.7 78 7 2 5 5 5 0 0   17 2.15 2.93 77.1 -0.99 -0.23 15.1 88 6 5 9 10 2 1 0   18 1.52 1.68 79.2 -1.39 -0.43 17.9 84 6 6 5 9 3 3 0  MSE 3022 F MSE 3030 F 19 2.16 2.94 87.4 -1.75 -0.51 19.2 89 5 6 9 9 2 0 0  DA 8 I DT 3 J DA 4 J 20 3.09 5.02 91.5 -1.61 -0.50 22.5 85 5 9 6 4 2 1 0  DG 2 I DT 3 I DT 3 J DA 4 J DG 5 J DC 7 J DA 8 J 21 2.49 3.05 94.6 -1.84 -0.42 19.6 83 10 9 10 6 3 5 0   22 2.73 2.87 98.1 -1.04 -0.28 17.1 79 10 8 5 7 3 4 0  DG 1 I DG 2 I DT 3 I DT 3 J DA 4 J 23 3.73 3.78 98.3 -1.19 -0.48 14.2 90 7 4 10 7 2 3 0  DG 1 I DA 8 I DT 3 J DA 4 J DG 5 J DC 10 J 24 3.19 3.19 104.2 -2.23 -0.62 27.2 85 11 12 9 5 1 2 0  DA 8 I DT 3 J DA 4 J DG 5 J DA 6 J DC 7 J DA 8 J 25 2.43 2.63 103.5 -1.59 -0.46 24.3 84 11 11 5 5 1 2 0  DG 2 I DT 3 I DT 3 J DA 4 J DG 5 J DC 7 J DA 8 J 26 2.77 2.80 106.8 -1.43 -0.56 16.4 91 6 7 12 6 2 3 0  DG 1 I DG 2 I DC 7 J DA 8 J DC 10 J 27 3.46 4.04 111.7 -0.99 -0.43 15.3 86 9 6 8 8 2 4 0  DG 1 I DG 2 I DT 3 I DT 3 J DA 4 J DC 10 J 28 1.48 1.71 117.7 -1.85 -0.40 22.6 84 14 12 9 6 3 3 0   29 1.77 3.19 125.2 -1.13 -0.37 16.4 88 12 8 11 8 5 2 0  DG 1 I DA 8 I DT 3 J DA 4 J DG 5 J DC 10 J 30 1.78 3.16 144.9 -1.06 -0.37 17.1 85 14 10 10 9 5 3 0  DG 1 I DG 2 I DT 3 I DT 3 J DA 4 J DC 10 J 31 1.44 1.44 33.9 0.49 0.21 8.4 74 3 2 2 6 4 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.