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PDBsum entry 3u5o
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Pore analysis for: 3u5o calculated with  MOLE 2.0
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PDB id
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3u5o
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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23 pores,
coloured by radius |
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26 pores,
coloured by radius
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26 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.34 |
1.65 |
34.7 |
-1.00 |
-0.32 |
17.8 |
74 |
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4 |
3 |
2 |
1 |
0 |
1 |
3 |
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2 |
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1.23 |
2.62 |
36.7 |
-1.62 |
-0.35 |
17.0 |
80 |
6 |
1 |
3 |
4 |
1 |
1 |
1 |
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3 |
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1.41 |
1.40 |
40.4 |
0.34 |
0.20 |
8.6 |
81 |
1 |
3 |
3 |
9 |
4 |
1 |
1 |
ALY 18 P
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4 |
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1.58 |
1.72 |
44.1 |
-2.20 |
-0.33 |
24.7 |
72 |
7 |
2 |
2 |
2 |
2 |
2 |
2 |
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5 |
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1.35 |
1.64 |
51.9 |
-0.58 |
-0.32 |
13.8 |
82 |
4 |
2 |
5 |
4 |
0 |
0 |
2 |
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6 |
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1.51 |
2.93 |
68.9 |
-1.42 |
-0.43 |
14.8 |
80 |
8 |
4 |
7 |
6 |
0 |
3 |
1 |
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7 |
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3.28 |
3.62 |
70.2 |
-1.68 |
-0.61 |
18.1 |
83 |
8 |
4 |
8 |
12 |
1 |
1 |
0 |
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8 |
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1.53 |
2.96 |
72.0 |
-1.96 |
-0.48 |
18.5 |
75 |
8 |
6 |
4 |
3 |
0 |
4 |
2 |
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9 |
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1.22 |
1.23 |
75.1 |
-1.14 |
-0.57 |
11.2 |
83 |
4 |
6 |
8 |
4 |
0 |
1 |
2 |
ALY 14 N
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10 |
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1.38 |
1.65 |
77.3 |
-1.14 |
-0.34 |
12.7 |
76 |
6 |
5 |
6 |
4 |
0 |
3 |
3 |
ALY 14 N
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11 |
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1.33 |
1.37 |
80.4 |
-0.69 |
-0.32 |
12.8 |
88 |
3 |
5 |
6 |
5 |
1 |
0 |
1 |
ALY 14 N
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12 |
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1.20 |
1.23 |
85.2 |
-1.75 |
-0.48 |
16.8 |
74 |
8 |
6 |
6 |
3 |
0 |
4 |
3 |
ALY 14 J
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13 |
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1.20 |
1.23 |
87.9 |
-1.69 |
-0.66 |
16.3 |
81 |
7 |
7 |
7 |
3 |
0 |
2 |
2 |
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14 |
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1.20 |
1.23 |
96.7 |
-1.39 |
-0.61 |
13.9 |
85 |
7 |
6 |
10 |
6 |
0 |
1 |
1 |
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15 |
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1.43 |
1.70 |
122.6 |
-1.66 |
-0.41 |
18.4 |
72 |
11 |
9 |
7 |
5 |
1 |
5 |
6 |
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16 |
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1.37 |
2.78 |
119.9 |
-2.02 |
-0.53 |
21.8 |
81 |
12 |
8 |
10 |
10 |
1 |
6 |
1 |
ALY 14 M
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17 |
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1.48 |
2.84 |
129.4 |
-1.08 |
-0.35 |
13.7 |
83 |
8 |
7 |
11 |
9 |
1 |
3 |
1 |
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18 |
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1.57 |
1.74 |
132.3 |
-1.50 |
-0.54 |
16.6 |
77 |
11 |
8 |
7 |
3 |
0 |
7 |
5 |
M3L 9 I ALY 14 I ALY 14 J
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19 |
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1.23 |
1.32 |
139.4 |
-1.34 |
-0.38 |
15.7 |
79 |
11 |
10 |
10 |
8 |
1 |
4 |
4 |
ALY 18 N
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20 |
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1.20 |
1.20 |
145.3 |
-1.86 |
-0.52 |
19.1 |
76 |
12 |
11 |
10 |
4 |
0 |
9 |
6 |
M3L 9 I ALY 14 I
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21 |
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3.09 |
3.15 |
140.7 |
-1.68 |
-0.52 |
21.1 |
77 |
15 |
9 |
6 |
11 |
2 |
4 |
3 |
ALY 14 J
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22 |
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1.26 |
1.32 |
145.5 |
-1.08 |
-0.42 |
15.1 |
81 |
11 |
13 |
13 |
12 |
3 |
3 |
7 |
ALY 18 K ALY 18 N
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23 |
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1.18 |
1.18 |
151.4 |
-1.45 |
-0.53 |
13.8 |
80 |
11 |
10 |
14 |
7 |
0 |
4 |
3 |
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24 |
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1.15 |
1.36 |
153.7 |
-1.97 |
-0.51 |
22.8 |
77 |
17 |
12 |
9 |
12 |
2 |
6 |
4 |
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25 |
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1.48 |
2.76 |
187.0 |
-1.47 |
-0.51 |
14.4 |
81 |
13 |
10 |
15 |
9 |
0 |
5 |
4 |
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26 |
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1.33 |
1.32 |
187.9 |
-1.53 |
-0.51 |
20.2 |
80 |
18 |
16 |
11 |
17 |
3 |
4 |
5 |
ALY 18 N
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program