spacer
spacer

PDBsum entry 3tzi

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3tzi calculated with MOLE 2.0 PDB id
3tzi
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
15 tunnels, coloured by tunnel radius 15 tunnels, coloured by tunnel radius 15 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.33 36.2 0.16 0.05 8.0 77 3 0 5 7 3 1 0  6 EDO B,671 NAG B
2 1.31 37.1 -0.20 -0.21 6.6 79 2 1 4 6 3 1 0  6 EDO B
3 1.32 45.1 0.06 -0.09 6.4 79 3 1 5 8 3 1 0  671 NAG A,672 NAG A,6 EDO B
4 1.31 45.0 -0.48 -0.17 11.0 80 4 1 5 6 3 1 0  671 NAG B
5 1.27 12.6 -1.20 -0.24 19.4 73 2 2 0 1 1 0 0  
6 1.71 11.7 -0.94 -0.18 13.4 71 1 1 1 2 2 2 0  3 EDO B
7 1.90 10.6 -2.20 -0.68 20.3 92 2 2 2 1 0 0 0  5 EDO A
8 1.29 10.4 -1.66 -0.53 20.6 85 0 2 1 0 1 0 0  
9 1.28 22.1 0.00 -0.23 7.6 80 1 1 1 5 0 2 0  
10 1.38 12.2 0.27 -0.20 4.0 79 1 0 1 4 0 1 0  
11 1.73 7.8 0.52 -0.13 2.2 81 0 0 1 4 0 2 0  
12 1.68 7.5 0.50 0.27 3.1 80 1 0 2 2 1 1 0  
13 1.57 7.5 0.95 0.23 1.8 84 0 0 3 2 1 1 0  
14 1.57 8.7 0.57 0.18 4.7 89 1 0 3 2 1 0 0  
15 1.90 4.8 -0.42 -0.08 14.6 87 0 1 1 0 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer