PDBsum entry 3tyf

Pore analysis for: 3tyf calculated with

MOLE 2.0

PDB id

3tyf

Pores calculated on whole structure

Pores calculated excluding ligands

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9 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.63

3.72

48.3

-1.25

-0.37

8.9

82

3

4

6

3

1

3

1

GOL 302 C

2

1.64

1.81

58.8

-0.86

-0.27

16.1

76

2

7

3

6

3

4

0

GOL 301 B GOL 302 C

3

1.27

1.46

66.0

-1.22

-0.36

9.6

82

3

4

7

5

3

2

1

4

1.66

1.84

71.9

-1.33

-0.40

13.5

84

3

5

8

4

2

3

1

5

1.17

2.59

73.0

-0.47

-0.01

16.1

78

3

4

5

7

2

2

0

GOL 303 A GOL 1000 D

6

1.21

1.42

81.4

-1.44

-0.39

10.1

83

4

6

10

7

3

3

0

GOL 302 C

7

1.20

1.40

82.8

-0.95

-0.19

11.8

76

3

4

8

8

4

3

0

GOL 1000 D

8

1.59

1.75

87.9

-1.88

-0.53

17.0

84

3

4

9

3

2

1

0

9

2.37

2.76

91.2

-1.33

-0.50

12.7

84

1

7

10

4

0

4

0

GOL 301 B GOL 302 C

10

1.18

1.38

101.4

-1.33

-0.36

12.5

83

4

7

11

8

4

3

0

11

1.23

2.63

103.7

-1.02

-0.28

9.5

82

4

6

13

11

3

4

0

GOL 302 C GOL 1000 D

12

1.17

2.57

125.0

-0.91

-0.27

11.1

82

4

7

14

12

5

4

0

GOL 1000 D

13

1.21

1.40

133.8

-1.61

-0.53

10.7

87

3

7

18

6

2

3

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.