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PDBsum entry 3tvh
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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 3tvh calculated with MOLE 2.0 PDB id
3tvh
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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25 tunnels, coloured by tunnel radius 25 tunnels, coloured by tunnel radius 25 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.16 1.16 90.4 -0.66 -0.52 11.3 85 7 0 0 5 0 0 0  C 461 A A 470 A A 471 A A 472 A G 474 A A 507 A G
508 A C 565 A G 577 A A 578 A G 579 A C 580 A C
581 A C 673 A G 808 A G 809 A A 1253 A A 1254 A U
1255 A G 1256 A C 1257 A C 1258 A G 1259 A G 1260
A C 1261 A A 2015 A A 2060 A G 2502 A
2 1.33 1.33 91.8 -0.39 -0.75 4.1 93 1 0 0 1 0 0 0  U 566 A A 567 A U 568 A U 569 A G 570 A A 575 A U
576 A G 577 A C 673 A G 808 A G 830 A A 945 A G
946 A G 947 A C 964 A A 1254 A U 1255 A G 1256 A
A 2060 A C 2065 A C 2066 A G 2067 A G 2246 A A
2247 A C 2248 A U 2249 A G 2252 A G 2253 A C 2254
A G 2255 A G 2256 A A 2426 A G 2436 A U 2437 A G
2447 A A 2448 A U 2449 A C 2498 A U 2500 A G 2502
A
3 1.23 1.23 93.1 -0.31 -0.71 4.0 93 1 0 0 1 0 0 0  U 566 A U 576 A G 577 A C 673 A G 808 A A 1254 A
U 1255 A G 1256 A A 2060 A G 2061 A A 2062 A C
2063 A C 2064 A C 2065 A C 2066 A G 2252 A U 2438
A A 2439 A C 2441 A C 2442 A C 2443 A G 2444 A G
2445 A G 2446 A G 2447 A A 2451 A U 2493 A G 2502
A U 2506 A C 2507 A U 2555 A C 2573 A U 2584 A U
2585 A C 2601 A A 2602 A
4 1.19 1.19 96.9 -0.42 -0.77 4.2 94 2 0 0 1 0 0 0  U 566 A A 567 A U 568 A U 569 A G 570 A A 575 A U
576 A G 577 A C 673 A G 808 A G 823 A A 824 A C
825 A A 829 A A 945 A G 946 A G 947 A C 964 A C
965 A A 1254 A U 1255 A G 1256 A A 2060 A C 2248
A U 2249 A G 2256 A U 2257 A G 2259 A A 2274 A C
2275 A G 2447 A A 2448 A U 2449 A C 2498 A U 2500
A G 2502 A
5 1.30 1.30 103.6 -0.41 -0.76 4.1 93 1 0 0 1 0 0 0  U 566 A A 567 A U 568 A U 569 A G 570 A A 575 A U
576 A G 577 A C 673 A G 808 A A 945 A G 947 A G
948 A C 949 A C 961 A G 979 A A 980 A C 982 A A
983 A A 984 A C 985 A G 1002 A G 1003 A G 1025 A
U 1026 A C 1145 A C 1146 A C 1147 A A 1148 A G
1149 A A 1254 A U 1255 A G 1256 A G 2029 A A 2030
A A 2031 A A 2060 A G 2447 A A 2448 A C 2498 A U
2500 A G 2502 A G 86 B G 87 B C 88 B
6 1.32 1.32 105.5 -0.37 -0.76 3.9 93 1 0 0 1 0 0 0  U 566 A A 567 A U 568 A U 569 A G 570 A A 575 A U
576 A G 577 A C 673 A G 808 A G 823 A A 824 A C
825 A U 827 A U 828 A A 829 A A 945 A G 946 A G
947 A C 964 A C 965 A A 1254 A U 1255 A G 1256 A
A 2060 A G 2246 A C 2248 A U 2249 A C 2258 A G
2259 A A 2274 A G 2421 A A 2422 A U 2423 A C 2424
A A 2425 A A 2426 A C 2427 A A 2430 A U 2431 A A
2432 A A 2433 A G 2447 A A 2448 A U 2449 A C 2498
A U 2500 A G 2502 A
7 1.40 1.40 118.3 -0.38 -0.74 3.9 78 1 0 0 1 1 0 0  U 566 A A 567 A U 568 A U 569 A G 570 A A 575 A U
576 A G 577 A C 673 A G 808 A A 945 A G 947 A G
948 A C 949 A U 958 A A 959 A C 961 A A 983 A A
984 A A 1254 A U 1255 A G 1256 A G 2029 A A 2030
A A 2031 A A 2060 A G 2447 A A 2448 A U 2457 A G
2458 A A 2459 A U 2460 A C 2461 A U 2462 A C 2463
A G 2482 A C 2483 A G 2485 A G 2486 A G 2487 A C
2498 A U 2500 A G 2502 A C 88 B G 89 B
8 1.27 1.27 119.7 -0.70 -0.72 4.2 79 2 0 3 1 1 0 0  U 566 A A 567 A U 568 A U 569 A G 570 A A 575 A U
576 A G 577 A C 673 A G 808 A G 823 A A 824 A C
825 A A 829 A A 945 A G 946 A G 947 A C 964 A C
965 A A 1254 A U 1255 A G 1256 A A 2060 A U 2249
A G 2259 A C 2260 A C 2261 A A 2274 A C 2283 A A
2361 A G 2362 A C 2363 A G 2389 A U 2390 A G 2391
A G 2421 A A 2422 A G 2428 A G 2447 A A 2448 A U
2449 A C 2498 A U 2500 A G 2502 A
9 1.19 1.18 125.7 -0.47 -0.75 5.2 86 2 0 0 1 0 0 0  U 566 A A 567 A U 568 A U 569 A G 570 A A 575 A U
576 A G 577 A C 673 A G 808 A G 818 A A 819 A A
820 A A 821 A U 822 A C 837 A C 838 A U 839 A A
841 A G 842 A G 843 A G 845 A G 932 A A 933 A G
934 A A 945 A G 946 A G 947 A C 964 A C 965 A G
966 A C 967 A G 968 A U 969 A U 1167 A G 1168 A G
1169 A G 1170 A G 1176 A A 1254 A U 1255 A G 1256
A A 2060 A G 2447 A A 2448 A U 2449 A C 2498 A U
2500 A G 2502 A
10 1.40 1.40 127.8 -0.53 -0.76 5.2 84 2 1 1 3 0 0 0  U 566 A A 567 A U 568 A U 569 A G 570 A A 575 A U
576 A G 577 A C 673 A G 808 A G 823 A A 824 A C
825 A A 829 A G 859 A C 867 A U 868 A G 869 A U
913 A C 914 A A 945 A G 946 A G 947 A C 964 A C
965 A A 1254 A U 1255 A G 1256 A A 2060 A U 2249
A G 2259 A C 2263 A C 2264 A U 2265 A G 2270 A G
2271 A U 2272 A A 2273 A A 2274 A G 2321 A A 2322
A A 2328 A G 2329 A G 2330 A G 2331 A G 2447 A A
2448 A U 2449 A C 2498 A U 2500 A G 2502 A
11 1.18 1.18 127.3 -0.37 -0.73 4.5 90 2 0 0 2 0 0 0  U 566 A A 567 A U 568 A U 569 A G 570 A A 575 A U
576 A G 577 A C 673 A G 808 A A 945 A G 947 A G
948 A C 949 A C 961 A A 983 A A 984 A G 1022 A U
1026 A C 1124 A G 1125 A A 1127 A A 1128 A A 1129
A U 1133 A A 1254 A U 1255 A G 1256 A G 2027 A U
2028 A G 2029 A A 2030 A A 2031 A A 2060 A G 2447
A A 2448 A C 2456 A U 2457 A G 2489 A G 2490 A C
2498 A U 2500 A G 2502 A C 2539 A A 2541 A A 2741
A C 2742 A C 88 B
12 1.19 1.19 129.7 -0.49 -0.76 4.6 86 2 0 1 1 0 1 0  U 566 A A 567 A U 568 A U 569 A G 570 A A 575 A U
576 A G 577 A C 673 A G 808 A A 945 A G 947 A G
948 A C 949 A G 950 A C 951 A C 961 A C 982 A A
983 A A 984 A C 985 A A 1254 A U 1255 A G 1256 A
G 2029 A A 2030 A A 2031 A A 2060 A G 2447 A A
2448 A C 2498 A U 2500 A G 2502 A A 78 B C 79 B U
80 B G 81 B G 82 B G 83 B C 84 B G 85 B G 86 B C
88 B G 89 B G 92 B C 93 B C 94 B U 95 B G 96 B G
97 B G 98 B
13 1.22 1.22 135.7 -0.88 -0.72 10.1 81 5 1 0 1 0 0 0  U 566 A A 567 A U 568 A U 569 A G 570 A A 575 A U
576 A G 577 A C 673 A G 808 A G 818 A A 819 A A
820 A A 821 A U 822 A A 945 A G 946 A G 947 A C
964 A C 965 A G 966 A C 967 A G 968 A U 969 A C
970 A G 974 A G 989 A A 990 A C 991 A C 1158 A U
1159 A G 1160 A C 1161 A G 1162 A G 1163 A C 1179
A C 1180 A C 1181 A A 1182 A G 1183 A C 1185 A A
1254 A U 1255 A G 1256 A A 2060 A G 2447 A A 2448
A U 2449 A C 2498 A U 2500 A G 2502 A
14 1.27 1.27 148.6 -0.81 -0.62 8.7 80 7 0 0 2 1 1 0  C 150 A C 151 A G 177 A G 178 A G 212 A C 461 A C
462 A C 565 A G 577 A A 578 A G 579 A C 580 A C
581 A C 673 A A 676 A A 677 A C 678 A C 679 A G
680 A G 681 A G 682 A C 683 A A 751 A U 773 A A
774 A G 775 A G 776 A C 790 A G 794 A C 795 A C
796 A G 808 A G 809 A A 1253 A A 1254 A U 1255 A
G 1256 A C 1257 A C 1258 A G 1259 A G 1260 A C
1261 A U 1357 A G 1358 A A 1359 A A 1367 A G 1368
A G 1369 A A 2015 A A 2060 A G 2502 A
15 1.14 1.15 158.6 -0.86 -0.60 8.7 79 9 0 2 2 2 1 0  C 461 A C 462 A C 565 A G 577 A A 578 A G 579 A C
580 A C 581 A C 673 A A 676 A A 677 A C 678 A C
679 A G 680 A G 681 A G 682 A A 751 A G 775 A G
776 A A 777 A C 790 A G 794 A C 795 A C 796 A G
808 A G 809 A A 1253 A A 1254 A U 1255 A G 1256 A
C 1257 A C 1258 A G 1259 A G 1260 A C 1261 A U
1808 A A 2015 A A 2060 A U 2079 A G 2080 A C 2081
A A 2082 A G 2083 A C 2084 A C 2231 A U 2232 A U
2233 A G 2234 A G 2235 A C 2236 A G 2237 A G 2502
A
16 1.18 1.19 160.3 -0.87 -0.65 10.1 84 6 0 0 3 1 0 0  C 565 A G 577 A A 578 A G 579 A C 580 A C 581 A C
673 A G 741 A G 742 A C 790 A G 808 A G 809 A A
1253 A A 1254 A U 1255 A G 1256 A C 1257 A C 1258
A G 1259 A G 1260 A C 1261 A C 1672 A U 1673 A C
1675 A A 1689 A A 1690 A A 1700 A C 1765 A U 1766
A C 1767 A U 1768 A A 1978 A C 1979 A G 1980 A A
1981 A C 1982 A C 1983 A A 2015 A A 2058 A A 2059
A A 2060 A A 2062 A G 2502 A G 2505 A G 2581 A G
2582 A U 2584 A C 2586 A G 2608 A U 2609 A C 2610
A U 2611 A
17 1.15 1.15 172.3 -0.75 -0.66 8.4 82 5 0 1 3 1 0 0  C 565 A G 577 A A 578 A G 579 A C 580 A C 581 A C
673 A A 735 A G 738 A G 739 A G 743 A G 744 A G
745 A A 746 A A 752 A C 753 A C 754 A C 755 A C
756 A U 757 A C 758 A C 790 A G 808 A G 809 A A
1253 A A 1254 A U 1255 A G 1256 A C 1257 A C 1258
A G 1259 A G 1260 A C 1261 A C 1636 A A 1637 A G
1661 A G 1678 A U 1679 A U 1680 A G 1681 A G 1704
A C 1754 A A 1755 A A 1759 A A 1760 A C 1761 A A
1762 A C 1782 A C 1990 A A 2015 A A 2060 A G 2502
A U 2609 A U 2712 A A 2712 A i:A U 2716 A G 2717 A
18 1.19 1.19 188.6 -0.65 -0.59 7.3 67 6 0 0 3 3 1 0  C 461 A C 462 A C 565 A G 577 A A 578 A G 579 A C
580 A C 581 A C 673 A A 676 A A 677 A C 678 A C
679 A G 680 A G 681 A G 682 A A 751 A G 775 A G
776 A A 777 A C 790 A G 794 A C 795 A C 796 A G
808 A G 809 A A 1253 A A 1254 A U 1255 A G 1256 A
C 1257 A C 1258 A G 1259 A G 1260 A C 1261 A U
1805 A C 1806 A G 1807 A U 1808 A G 1839 A G 1840
A U 1841 A G 1842 A C 1843 A C 1844 A G 1891 A C
1892 A C 1893 A C 1895 A G 1896 A G 1897 A A 2015
A A 2060 A C 2081 A A 2082 A G 2083 A C 2084 A C
2085 A C 2236 A G 2239 A G 2502 A
19 1.16 1.16 194.5 -0.68 -0.65 7.2 75 6 0 0 3 1 1 0  C 461 A C 462 A C 565 A G 577 A A 578 A G 579 A C
580 A C 581 A C 673 A A 676 A A 677 A C 678 A C
679 A G 680 A G 681 A G 682 A A 751 A G 775 A G
776 A A 777 A C 790 A G 794 A C 795 A C 796 A G
808 A G 809 A A 1253 A A 1254 A U 1255 A G 1256 A
C 1257 A C 1258 A G 1259 A G 1260 A C 1261 A U
1372 A A 1373 A G 1421 A G 1422 A C 1493 A G 1801
A A 1803 A C 1804 A U 1805 A C 1806 A G 1807 A U
1808 A A 1810 A G 1811 A A 1812 A G 1814 A A 1815
A G 1816 A A 2015 A A 2060 A C 2081 A A 2082 A G
2083 A C 2084 A U 2208 A C 2209 A G 2228 A C 2229
A G 2239 A G 2502 A
20 1.29 1.44 16.4 1.01 0.36 8.1 69 1 0 0 4 1 1 0  
21 1.12 3.75 25.4 2.84 1.18 2.6 71 0 1 0 9 2 0 0  
22 1.39 1.71 25.7 0.83 0.18 7.7 79 1 2 0 5 1 1 0  
23 1.16 3.80 31.2 1.09 0.34 4.1 80 1 0 1 9 1 1 0  
24 1.89 1.89 15.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 1716 A G 1718 A G 1725 A G 1726 A U 1727 A G
1728 A G 1731 A A 1732 A G 1733 A C 1734 A C 1735
A C 1741 A
25 1.72 1.72 17.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 1718 A G 1725 A G 1726 A U 1727 A G 1728 A U
1730 A G 1731 A A 1732 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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