PDBsum entry 3tu5 Go to PDB code:  Tunnel analysis for: 3tu5 calculated with MOLE 2.0 PDB id 3tu5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.66 26.4 -0.29 -0.18 9.9 85 2 0 3 7 1 0 0  ATP 377 A 2 1.28 1.46 27.9 -0.14 -0.07 8.9 89 2 0 4 6 1 0 0  ATP 377 A 3 1.35 1.38 39.0 -1.03 -0.41 17.0 79 4 4 3 6 2 0 0  CA 376 A ATP 377 A 4 1.32 1.34 40.6 -0.80 -0.35 14.4 81 4 4 4 5 2 0 0  CA 376 A ATP 377 A 5 1.36 1.39 52.8 -1.20 -0.41 16.8 80 5 4 3 6 2 0 0  CA 376 A ATP 377 A 6 1.32 1.33 54.3 -1.10 -0.33 16.0 83 5 4 4 5 2 0 0  CA 376 A ATP 377 A 7 1.46 1.46 17.1 -0.41 0.27 9.4 76 0 1 1 3 3 0 0  MPD 379 A 8 1.42 1.43 19.1 -0.27 0.71 4.8 77 1 1 1 4 3 1 0  MPD 378 A MPD 379 A 9 1.43 1.44 26.4 -0.92 -0.05 13.4 82 2 2 2 4 3 0 0  MPD 379 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.