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PDBsum entry 3tu4
Go to PDB code: 
Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 3tu4 calculated with MOLE 2.0 PDB id
3tu4
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.54 1.67 26.9 -1.41 -0.27 23.2 76 3 2 3 2 1 1 0  
2 1.57 1.62 27.3 -1.90 -0.42 24.8 76 4 5 2 1 1 1 0  
3 1.39 1.39 29.8 -1.34 -0.49 20.3 79 4 0 0 1 0 0 0  DC 70 I DT 74 I DT 75 I DG 70 J DA 71 J DG 72 J D
A 73 J DA 74 J DT 75 J
4 3.16 3.16 30.7 -2.41 -0.55 25.1 76 4 0 1 0 0 1 0  DA 69 I DC 70 I DT 134 I DT 142 I DC 143 I DC 144
I DA 10 J DT 11 J DA 12 J DT 13 J DT 75 J
5 1.54 1.66 34.5 -2.03 -0.42 28.0 76 4 5 3 1 1 1 0  
6 2.66 2.76 54.5 -2.11 -0.66 21.2 81 11 4 4 0 1 0 0  
7 1.43 1.57 55.3 -1.65 -0.49 22.6 80 8 5 3 4 0 0 0  DA 90 I DG 52 J DG 53 J DC 63 J
8 2.08 4.01 61.6 -2.68 -0.41 30.3 77 12 3 3 1 3 0 0  DA 39 I DG 29 J DT 105 J
9 3.02 3.02 61.8 -1.12 -0.73 10.6 91 5 1 5 1 0 0 0  DC 47 I DT 48 I DA 49 I DA 124 I DC 125 I DA 131
I DA 133 I DT 134 I DA 10 J DT 11 J DA 12 J DT 13
J DA 19 J DC 93 J
10 1.22 1.23 70.3 -1.63 -0.44 24.1 86 4 9 5 6 0 1 0  
11 3.02 3.02 71.4 -0.79 -0.56 10.5 91 4 0 5 2 0 0 0  DC 47 I DT 48 I DA 49 I DA 52 I DC 53 I DA 124 I
DC 125 I DA 19 J DA 90 J DA 91 J DC 93 J DG 94 J
12 2.10 4.16 76.0 -2.56 -0.46 29.7 76 14 5 3 1 4 0 0  DA 39 I DG 29 J DT 105 J
13 3.68 3.81 79.7 -1.69 -0.59 18.5 86 9 2 7 2 1 0 0  DA 39 I DA 49 I DA 131 I DA 133 I DT 134 I DA 10
J DT 11 J DA 12 J DT 13 J DA 19 J DG 29 J DC 93 J
DG 103 J DT 105 J
14 1.34 1.34 85.6 -1.57 -0.40 24.6 83 7 10 6 8 0 1 0  
15 3.02 3.19 86.3 -1.63 -0.64 16.9 89 11 2 9 2 0 0 0  DC 42 I DA 43 I DA 49 I DA 131 I DA 133 I DT 134
I DA 10 J DT 11 J DA 12 J DT 13 J DA 19 J DC 93 J
DG 103 J DC 104 J
16 1.94 4.55 90.0 -2.33 -0.44 25.7 77 16 4 5 1 5 0 0  DA 103 I DT 104 I DT 42 J DA 43 J DA 44 J
17 2.36 3.66 94.0 -1.18 -0.47 18.8 84 6 8 6 7 0 1 0  DC 42 I DA 43 I DA 110 J DC 111 J
18 2.28 3.80 100.7 -0.77 -0.31 17.3 82 7 5 4 7 1 1 0  DC 110 I DC 111 I DT 42 J DA 43 J
19 2.94 3.23 103.6 -1.27 -0.52 16.2 85 12 1 9 4 1 0 0  DG 19 I DA 90 I DA 91 I DC 93 I DG 94 I DC 95 I D
A 103 I DT 104 I DT 42 J DA 43 J DA 44 J DC 49 J
DT 51 J DG 52 J DG 53 J DC 63 J
20 1.62 1.63 107.3 -0.89 -0.19 18.9 84 10 4 4 8 2 1 0  DA 39 I DC 111 I DT 112 I DG 114 I DT 115 I DG 29
J DG 30 J DA 31 J DG 32 J DA 33 J DT 105 J
21 2.13 4.21 116.8 -1.97 -0.58 20.1 82 16 5 10 2 4 1 0  DA 49 I DA 131 I DA 133 I DT 134 I DA 10 J DT 11
J DA 12 J DT 13 J DA 19 J DC 93 J
22 2.72 3.87 118.2 -1.38 -0.54 19.7 84 11 5 7 3 0 0 0  DA 52 I DC 53 I DG 63 I DA 131 I DA 133 I DT 134
I DA 10 J DT 11 J DA 12 J DT 13 J DA 19 J DA 90 J
DA 91 J DC 93 J DG 94 J
23 1.35 1.35 126.1 -1.91 -0.48 22.0 85 11 5 4 5 1 0 0  DA 39 I DC 111 I DT 112 I DG 114 I DT 115 I DG 29
J DG 30 J DA 31 J DG 32 J DA 33 J DT 105 J
24 1.34 1.34 124.9 -1.75 -0.58 20.0 82 8 6 5 5 1 0 0  DC 110 I DC 111 I DT 42 J DA 43 J
25 1.90 4.32 130.8 -1.77 -0.48 20.5 83 18 5 12 4 4 0 0  DG 19 I DA 90 I DA 91 I DC 93 I DG 94 I DC 95 I
DC 49 J DT 51 J DG 52 J DG 53 J DC 63 J
26 1.64 1.88 132.9 -1.33 -0.50 17.9 84 13 2 5 5 0 1 0  DT 9 I DC 10 I DG 19 I DT 74 I DT 75 I DC 76 I DA
90 I DA 91 I DC 93 I DG 94 I DC 95 I DT 51 J DG
52 J DG 53 J DG 69 J DG 70 J DA 133 J DC 134 J DC
142 J DT 143 J DC 144 J
27 2.77 2.89 140.5 -1.70 -0.63 21.6 86 15 4 9 4 0 0 0  DG 19 I DA 29 I DA 39 I DA 90 I DA 91 I DC 93 I
DG 94 I DC 95 I DT 105 I DG 114 I DG 29 J DG 39 J
DC 49 J DT 51 J DG 52 J DG 53 J DC 63 J DT 105 J
DC 114 J DC 115 J
28 1.60 1.94 143.7 -1.52 -0.60 17.4 85 15 1 8 4 1 1 0  DT 9 I DC 10 I DG 19 I DT 74 I DT 75 I DC 76 I DC
93 I DA 103 I DT 104 I DT 42 J DA 43 J DA 44 J DC
49 J DG 69 J DG 70 J DA 133 J DC 134 J DC 142 J
DT 143 J DC 144 J
29 1.89 2.06 174.5 -1.94 -0.56 21.3 83 21 5 11 4 4 1 0  DT 9 I DC 10 I DG 19 I DT 74 I DT 75 I DC 76 I DC
93 I DC 49 J DG 69 J DG 70 J DA 133 J DC 134 J DC
142 J DT 143 J DC 144 J
30 0.82 0.85 181.5 -1.05 -0.45 14.2 88 11 3 11 9 1 0 0  DG 19 I DA 20 I DG 21 I DG 22 I DC 23 I DA 90 I D
A 91 I DC 93 I DG 94 I DC 95 I DC 49 J DT 51 J DG
52 J DG 53 J DC 63 J DA 121 J DG 122 J DG 124 J
DG 125 J DC 126 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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