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PDBsum entry 3tmj

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Tunnel analysis for: 3tmj calculated with MOLE 2.0 PDB id
3tmj
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.53 11.2 -1.36 0.04 21.1 83 3 0 2 2 1 1 0  902 DOD A,903 DOD A,905 DOD A,1077 DOD A,1081 DOD
A,1169 DOD A
2 1.49 13.6 -1.57 -0.04 19.7 84 3 0 2 3 1 1 0  902 DOD A,903 DOD A,905 DOD A,1077 DOD A,1081 DOD
A,1118 DOD A,1126 DOD A,1169 DOD A,1186 DOD A
3 3.17 8.2 -1.85 -0.45 14.9 73 1 2 0 0 1 2 0  1033 DOD A,1091 DOD A,1151 DOD A
4 1.27 7.6 -1.57 0.76 22.0 62 3 1 0 0 3 1 0  1042 DOD A,1106 DOD A,1143 DOD A,1193 DOD A,1194
DOD A
5 1.41 6.2 -1.04 -0.10 29.6 67 2 1 0 2 0 0 0  1120 DOD A,1195 DOD A
6 1.95 4.0 -0.27 0.04 2.1 67 0 0 1 1 1 2 0  1066 DOD A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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