PDBsum entry 3thm Go to PDB code:  Tunnel analysis for: 3thm calculated with MOLE 2.0 PDB id 3thm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 1.76 24.4 -0.36 -0.35 9.6 93 2 0 2 5 0 1 0   2 1.33 1.64 24.5 -0.23 -0.42 7.4 90 1 1 1 5 0 1 0   3 1.32 1.65 30.0 -0.53 -0.32 15.2 96 2 1 2 6 0 0 0   4 1.33 1.57 34.4 -0.76 -0.24 12.7 86 2 2 1 5 1 2 0   5 1.39 1.39 19.0 -0.73 -0.56 7.5 82 2 1 5 1 1 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.