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PDBsum entry 3tdb

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Cleft analysis for: 3tdb PDB id
3tdb
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 2728.27 3.64 58.22 6 10.64 2 13.15 1 3 6 13 9 6 5 0 PE4 300[A] (24 atoms)
2 749.67 0.00 67.51 2 8.56 3 8.24 3 5 1 7 3 2 0 1 3TB 1[A] (31 atoms)
3 537.47 0.00 54.67 8 6.50 5 7.63 4 4 1 0 1 2 3 0  
4 460.69 0.00 68.82 1 10.66 1 8.38 2 3 2 0 3 2 3 0  
5 317.67 0.00 60.37 4 5.32 6 6.45 5 1 1 1 2 1 2 0  
6 280.12 0.00 67.06 3 7.73 4 0.00 10 2 3 2 2 1 0 1  
7 268.31 0.00 60.09 5 4.74 7 6.15 6 3 1 3 1 1 0 0  
8 274.22 0.00 51.42 9 1.56 9 5.53 7 1 1 2 1 1 1 0  
9 121.50 0.00 50.00 10 4.40 8 5.38 8 1 1 2 0 0 1 0  
10 142.59 0.00 57.58 7 0.71 10 4.82 9 2 1 0 2 0 1 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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