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PDBsum entry 3t3m

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protein ligands metals Protein-protein interface(s) links
Cell adhesion PDB id
3t3m

 

 

 

 

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Contents
Protein chains
454 a.a.
466 a.a.
214 a.a.
214 a.a.
Ligands
NAG-NAG-BMA-MAN-
MAN
NAG-NAG ×2
NAG-NAG-BMA-MAN
RC2 ×2
SO4 ×4
NAG ×2
Metals
_CL ×3
_CA ×12
Waters ×855
PDB id:
3t3m
Name: Cell adhesion
Title: A novel high affinity integrin alphaiibbeta3 receptor antagonist that unexpectedly displaces mg2+ from the beta3 midas
Structure: Integrin alpha-iib. Chain: a, c. Fragment: unp residues 32-488. Synonym: gpalpha iib, gpiib, platelet membrane glycoprotein iib, integrin alpha-iib heavy chain, integrin alpha-iib light chain, form 1, integrin alpha-iib light chain, form 2. Engineered: yes. Integrin beta-3. Chain: b, d.
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: itga2b, gp2b, itgab. Expressed in: cricetulus griseus. Expression_system_taxid: 10029. Gene: itgb3, gp3a. Mus musculus. Organism_taxid: 10090.
Resolution:
2.60Å     R-factor:   0.180     R-free:   0.222
Authors: J.Zhu,J.Zhu,T.A.Springer
Key ref: J.Zhu et al. (2012). Structure-guided design of a high-affinity platelet integrin αIIbβ3 receptor antagonist that disrupts Mg²⁺ binding to the MIDAS. Sci Transl Med, 4, 125ra32-125ra32. PubMed id: 22422993
Date:
25-Jul-11     Release date:   28-Mar-12    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
P08514  (ITA2B_HUMAN) -  Integrin alpha-IIb from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1039 a.a.
454 a.a.
Protein chains
Pfam   ArchSchema ?
P05106  (ITB3_HUMAN) -  Integrin beta-3 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
788 a.a.
466 a.a.
Protein chains
No UniProt id for this chain
Struc: 214 a.a.
Protein chains
No UniProt id for this chain
Struc: 214 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
Sci Transl Med 4:125ra32-125ra32 (2012)
PubMed id: 22422993  
 
 
Structure-guided design of a high-affinity platelet integrin αIIbβ3 receptor antagonist that disrupts Mg²⁺ binding to the MIDAS.
J.Zhu, W.S.Choi, J.G.McCoy, A.Negri, J.Zhu, S.Naini, J.Li, M.Shen, W.Huang, D.Bougie, M.Rasmussen, R.Aster, C.J.Thomas, M.Filizola, T.A.Springer, B.S.Coller.
 
  ABSTRACT  
 
No abstract given.

 

 

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