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PDBsum entry 3sl8

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3sl8 calculated with MOLE 2.0 PDB id
3sl8
Pores calculated on whole structure Pores calculated excluding ligands

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13 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.51 1.63 35.7 -0.20 -0.12 5.3 92 1 1 7 6 2 1 0  JN7 18 A
2 1.90 1.96 44.1 -2.90 -0.67 23.2 88 4 4 8 1 1 0 0  
3 1.61 1.76 54.4 -2.17 -0.44 24.8 79 9 7 5 6 1 1 0  
4 2.20 2.20 63.1 -2.26 -0.39 29.8 81 11 9 5 7 2 1 0  EDO 2 C
5 1.48 1.63 64.8 -1.45 -0.32 15.5 88 4 4 8 7 2 1 0  JN7 18 A
6 1.73 2.82 68.5 -2.76 -0.58 36.1 88 12 7 3 4 0 0 0  DMS 7 C
7 1.57 1.79 69.0 -1.98 -0.34 26.3 81 11 9 4 8 1 1 0  EDO 9 D
8 1.55 1.77 71.3 -1.55 -0.27 19.6 78 9 7 9 10 3 0 0  EDO 2 C PEG 5 D
9 2.26 2.33 71.7 -1.92 -0.23 33.4 84 15 13 1 8 0 2 0  EDO 2 C EDO 9 D
10 2.32 3.46 74.5 -1.69 -0.22 26.7 80 12 12 4 9 2 1 0  EDO 2 C EDO 9 D
11 1.49 1.63 74.7 -0.21 -0.15 9.8 90 2 4 7 9 2 1 0  JN7 18 A
12 1.90 1.95 78.8 -1.84 -0.50 21.8 87 5 7 7 6 0 0 0  
13 1.79 2.29 83.5 -2.47 -0.56 20.5 83 8 8 15 5 3 1 0  EDO 8 A EDO 11 A
14 2.00 2.37 90.9 -1.97 -0.35 27.9 83 13 10 9 11 2 1 0  EDO 2 C EDO 3 C EDO 10 D
15 1.57 1.75 99.1 -1.45 -0.26 20.5 81 11 8 13 14 3 0 0  EDO 2 C EDO 3 C PEG 5 D EDO 10 D
16 1.65 1.93 100.9 -2.24 -0.48 30.0 81 16 11 7 11 1 1 0  DMS 7 C
17 1.98 2.39 102.3 -1.52 -0.22 26.1 82 14 13 8 13 2 1 0  EDO 2 C EDO 3 C EDO 9 D EDO 10 D
18 2.13 2.38 109.6 -2.12 -0.35 34.4 84 19 16 2 10 0 2 0  EDO 2 C DMS 7 C EDO 9 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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