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Ligand clusters for UniProt code P29768

Ligand clusters for P29768: Sialidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=nanH PE=1 SV=4

5 ligand clusters
Cluster 1.
6 ligand types
9 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Representative protein: 1dilA  
 

Structures

PDB   Schematic diagram
1dilA    
3silA    
2simA    
1dimA    

 

 Cluster 1 contains 6 ligand types

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Ligand Description


 
1. Ligand: GOL × 2
Glycerol
PDB codes: 3sil(A),

__K
 
2. Metal: __K × 3
PDB codes: 1dil(A), 1dim(A), 3sil(A).


 
3. Ligand: DAN × 1
2-Deoxy-2,3-Dehydro-N-Acetyl-Neuraminic acid
PDB code: 2sim(A).


 
4. Ligand: EQP × 1
(4-Acetamido-2,4-Dideoxy-D-Glycero-Alpha-D-Galacto-1- Octopyranosyl)phosphonic acid
PDB code: 1dim(A).


 
5. Ligand: EQP-AXP × 1
EQP=(4-Acetamido-2,4-Dideoxy-D-Glycero-Alpha-D-Galacto-1- Octopyranosyl)phosphonic acid, AXP=4-Acetamido-2,4-Didexoy-D-Glycero-Beta-D-Galacto-
Octopyranosylphosphonic acid (an axial phosphonate).
PDB code: 1dil(A).


 
6. Ligand: PO4 × 1
Phosphate ion
PDB code: 3sil(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
Glycerol
PDB code: 3sil(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
Glycerol
PDB code: 3sil(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
Glycerol
PDB code: 3sil(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
Glycerol
PDB code: 3sil(A).

 

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