PDBsum entry 3si8 Go to PDB code:  Pore analysis for: 3si8 calculated with MOLE 2.0 PDB id 3si8 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.20 2.20 34.0 -1.54 -0.21 22.4 79 4 1 2 4 1 1 0  DZ4 433 A DT 8 P DA 9 P DC 4 T TTD 5 T DA 6 T DT 7 T 2 1.14 1.44 37.6 -0.31 0.00 12.1 88 2 0 5 2 1 0 1  DT 1 P DG 2 P DC 3 P DT 5 P DT 8 P DA 9 P DC 4 T TTD 5 T DA 6 T DT 7 T DG 8 T DA 9 T 3 2.39 3.10 39.4 -0.23 0.01 12.7 84 4 0 4 2 2 0 1  DG 2 P DC 3 P DT 5 P DT 8 P DA 9 P DC 4 T TTD 5 T DA 6 T DT 7 T DG 8 T DA 9 T 4 1.82 3.04 49.8 -1.41 -0.22 24.7 76 9 3 0 6 2 1 0  DZ4 433 A GOL 437 A MG 450 A DA 9 P DA 6 T DT 7 T 5 2.06 2.08 56.8 -0.85 -0.59 8.6 82 2 1 4 3 1 0 0  DZ4 433 A DTT 443 A EDO 447 A DC 6 P DA 7 P DT 8 P DA 9 P DC 4 T TTD 5 T DA 6 T DT 7 T DG 8 T DA 9 T DC 10 T DG 11 T DC 12 T 6 2.34 2.54 57.8 -1.86 -0.54 20.2 73 4 3 2 2 1 1 0  3D1 438 A DTT 443 A EDO 447 A DC 6 P DA 7 P DA 9 T DC 10 T DG 11 T DC 12 T 7 2.08 2.10 60.1 -1.61 -0.58 18.0 87 6 2 2 2 0 1 0  DTT 443 A EDO 447 A DC 6 P DA 7 P DT 8 P DA 9 P D A 6 T DT 7 T DG 8 T DA 9 T DC 10 T DG 11 T DC 12 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.