PDBsum entry 3sdi Go to PDB code:  Pore analysis for: 3sdi calculated with MOLE 2.0 PDB id 3sdi Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.52 2.10 37.9 -0.37 -0.12 6.5 79 3 1 3 4 4 0 0   2 1.66 1.93 40.7 -2.05 -0.43 27.3 85 5 5 2 3 0 1 0   3 1.66 2.59 91.7 -1.79 -0.37 22.3 80 13 5 5 6 6 0 0   4 1.27 1.33 94.3 -2.10 -0.59 26.2 82 12 11 6 3 3 2 0   5 1.46 1.56 107.5 -1.34 -0.32 18.1 83 13 7 11 7 7 0 0   6 1.52 1.66 126.1 -1.79 -0.29 22.1 81 15 8 11 8 9 0 0   7 1.50 2.78 130.3 -1.84 -0.30 23.2 77 18 8 8 7 11 1 1   8 1.53 2.47 132.5 -2.25 -0.33 29.7 76 19 8 4 10 8 1 0   9 1.51 1.51 134.4 -1.55 -0.48 16.9 84 11 10 12 8 5 2 0  3SD 302 Y MES 303 Y 10 1.56 1.84 142.1 -1.76 -0.28 23.9 82 20 11 9 11 7 0 0   11 1.51 1.56 156.5 -1.51 -0.42 16.4 82 13 6 14 7 9 1 1  3SD 302 Y MES 303 Y 12 1.27 1.33 162.6 -2.62 -0.52 30.0 78 24 13 10 7 7 3 0   13 1.54 3.21 161.7 -2.24 -0.47 25.1 79 24 13 14 5 10 3 1   14 1.70 1.63 165.5 -1.81 -0.20 25.1 76 21 10 10 15 11 3 0   15 1.48 1.56 165.5 -1.92 -0.44 22.0 82 14 7 11 9 6 1 0  3SD 302 Y MES 303 Y 16 1.50 2.50 170.9 -1.53 -0.23 22.0 78 22 9 12 15 12 2 0   17 1.42 1.42 165.0 -1.76 -0.52 17.8 84 16 8 14 6 5 2 0   18 1.51 1.57 171.8 -1.55 -0.31 18.6 84 15 8 14 8 9 0 0  3SD 302 Y MES 303 Y 19 2.00 1.99 175.5 -1.60 -0.43 20.1 78 18 11 12 11 7 4 0   20 1.77 2.14 174.7 -1.86 -0.45 18.9 83 18 5 15 5 8 1 1   21 1.55 2.46 178.6 -1.65 -0.39 18.4 82 15 6 12 8 11 0 0  3SD 302 Y MES 303 Y 22 1.45 1.65 182.8 -1.34 -0.48 18.7 79 13 15 12 11 7 5 0   23 1.80 2.33 183.8 -2.24 -0.49 24.2 83 19 6 12 7 5 1 0   24 1.45 1.44 202.3 -1.98 -0.41 24.1 79 28 14 18 13 11 4 0   25 1.56 2.47 196.8 -1.99 -0.43 20.7 83 20 5 13 6 10 0 0   26 1.27 1.33 205.5 -1.90 -0.39 21.9 83 20 13 15 9 7 2 0   27 1.60 3.21 218.6 -1.83 -0.33 21.4 82 23 10 16 8 9 1 1   28 1.40 1.41 228.8 -2.15 -0.34 25.8 82 23 11 12 10 7 1 0   29 1.50 2.54 240.7 -2.00 -0.31 23.6 81 25 10 14 10 12 0 0   30 1.21 1.21 317.8 -1.96 -0.42 20.3 81 24 11 24 13 15 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.