PDBsum entry 3s9h Go to PDB code:  Pore analysis for: 3s9h calculated with MOLE 2.0 PDB id 3s9h Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.10 2.61 63.1 -0.11 0.24 15.0 78 5 3 2 7 3 1 0   2 0.83 2.68 66.6 -1.53 -0.13 28.0 81 12 6 3 5 3 0 0  DUP 904 A CA 907 A 3 1.53 1.66 98.7 -0.52 -0.20 10.8 84 9 1 7 5 4 1 0  DG 103 P DT 109 P DG 110 P DC 111 P DT 112 P DT 113 P DA 114 P DT 1 T DG 5 T DT 6 T DA 8 T DA 11 T DG 12 T DT 13 T 4 0.83 2.62 123.5 -1.30 -0.39 18.0 81 11 5 4 1 4 1 0  DUP 904 A CA 905 A DG 103 P DT 109 P DG 110 P DC 111 P DT 112 P DT 113 P DA 114 P DOC 115 P DT 1 T DG 5 T DT 6 T DA 8 T DA 11 T DG 12 T DT 13 T 5 1.27 1.25 170.4 -2.17 -0.53 26.8 82 13 13 9 2 4 0 0  DUP 904 A CA 905 A DT 113 P DA 114 P DOC 115 P DT 1 T DC 2 T DA 3 T DA 4 T DG 5 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.