PDBsum entry 3s4s Go to PDB code:  Tunnel analysis for: 3s4s calculated with MOLE 2.0 PDB id 3s4s Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 1.49 34.4 -1.78 -0.37 25.9 79 6 6 1 1 2 0 0   2 1.12 1.50 41.6 -1.40 -0.46 19.6 77 5 7 2 2 2 0 0   3 1.12 1.49 46.1 0.11 0.18 7.3 75 3 2 3 4 7 0 0   4 1.12 1.50 49.6 -0.10 0.22 8.0 71 3 2 3 4 8 0 0   5 1.17 1.33 25.2 -0.40 -0.25 18.2 83 3 5 0 4 0 1 0   6 1.18 1.33 30.9 -0.96 -0.43 21.0 79 2 7 1 3 0 1 0   7 1.19 1.33 31.9 -1.55 -0.49 24.3 81 4 6 1 2 0 1 0   8 1.22 1.34 52.0 -0.68 -0.15 17.3 76 5 6 2 5 4 1 0   9 1.24 1.36 54.6 -1.15 -0.41 20.3 78 6 8 3 5 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.