PDBsum entry 3rzd Go to PDB code:  Pore analysis for: 3rzd calculated with MOLE 2.0 PDB id 3rzd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   31 pores, coloured by radius 33 pores, coloured by radius 33 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.78 1.84 27.4 -0.59 -0.24 13.0 73 2 1 1 3 0 2 0   2 1.52 1.66 33.8 -1.25 -0.10 13.8 88 3 2 3 4 1 0 0   3 3.33 4.40 34.9 -2.14 -0.68 32.7 87 5 6 3 4 0 0 0   4 1.57 2.71 48.0 -2.14 -0.46 22.9 78 6 5 5 3 2 3 0   5 2.94 3.27 53.0 -1.79 -0.53 17.1 87 6 4 5 4 1 3 0   6 1.84 3.52 58.6 -1.65 -0.13 22.2 79 7 6 5 8 5 1 0   7 3.57 7.56 69.5 -1.78 -0.41 26.1 86 9 5 5 6 1 1 0   8 1.56 2.95 71.6 -1.87 -0.44 29.1 81 12 13 3 7 1 1 0   9 2.74 2.88 100.0 -1.90 -0.38 20.8 86 9 4 9 6 4 2 0  DA 6 R 10 2.70 3.88 112.1 -1.58 -0.39 24.9 86 13 7 6 10 2 1 0   11 1.43 1.42 111.6 -1.72 -0.41 23.4 83 10 5 4 6 2 3 0  DA 6 R DC 16 T DG 17 T DA 18 T 12 1.56 2.95 117.4 -1.94 -0.36 28.6 82 17 14 4 9 2 2 0   13 1.70 1.68 117.6 -1.25 -0.35 20.4 83 11 11 12 9 4 0 0   14 2.92 3.95 118.8 -1.21 -0.17 20.8 82 18 5 6 10 1 6 0  DA 6 R DA 18 T 15 2.41 3.38 119.5 -1.34 -0.19 20.3 84 14 4 8 6 3 3 0  DA 6 R DA 18 T 16 3.41 5.02 134.8 -1.93 -0.50 25.2 83 14 9 6 7 2 3 0  DA 6 R DA 18 T 17 1.52 2.75 135.9 -1.51 -0.39 17.9 82 10 8 7 9 5 1 0   18 1.50 1.54 139.9 -1.13 -0.37 16.0 84 10 7 8 8 4 0 0  DA 6 R DG 10 R DC 16 T DG 17 T DA 18 T DT 19 T 19 1.90 2.10 156.1 -1.84 -0.38 22.2 78 16 11 7 9 6 3 0   20 1.68 1.68 162.6 -1.49 -0.38 17.9 83 14 9 13 7 7 1 0  DA 6 R DG 10 R DA 18 T DT 19 T 21 1.67 1.67 162.0 -1.00 -0.22 17.2 84 17 8 11 11 5 2 0  DG 10 R DA 18 T DT 19 T 22 1.70 1.71 161.9 -1.31 -0.35 18.0 82 17 10 11 11 5 4 0  DA 6 R DG 10 R DA 18 T DT 19 T 23 2.78 3.86 158.1 -1.30 -0.24 21.0 84 18 6 8 9 3 5 0  DA 6 R DA 18 T 24 1.72 1.66 165.4 -1.85 -0.51 19.0 84 18 11 21 6 6 1 0   25 1.77 1.71 182.6 -1.52 -0.41 21.2 82 24 15 18 17 5 3 0   26 1.59 1.53 186.9 -1.88 -0.56 15.4 84 17 7 16 5 6 1 0  DA 6 R DG 10 R DC 16 T DG 17 T DA 18 T DT 19 T 27 1.19 1.30 192.5 -1.30 -0.29 20.1 86 15 11 11 20 5 2 0   28 1.65 1.65 209.0 -1.57 -0.39 16.3 85 24 8 19 8 7 3 0  DG 10 R DA 18 T DT 19 T 29 1.58 1.59 323.0 -1.94 -0.51 25.9 83 30 21 14 17 6 3 0   30 1.20 1.48 328.7 -1.72 -0.40 24.7 83 30 16 12 13 5 4 0  DC 16 T DG 17 T DA 18 T 31 2.60 2.89 25.2 -1.54 -0.35 25.1 85 4 3 2 5 0 2 0   32 1.15 2.29 40.6 -0.40 -0.09 15.7 85 6 4 3 7 1 1 1   33 1.26 2.69 27.7 -0.31 0.63 17.1 63 4 2 0 1 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.