spacer
spacer

PDBsum entry 3rvv

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3rvv calculated with MOLE 2.0 PDB id
3rvv
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.61 1.78 16.4 -1.42 -0.65 19.3 101 2 1 3 1 0 0 0  
2 1.61 1.81 27.7 -1.82 -0.65 18.7 85 1 3 2 0 1 3 0  
3 1.61 1.81 27.9 -1.81 -0.70 22.6 95 3 2 3 1 0 0 0  
4 1.44 2.79 33.5 -0.39 0.22 7.3 74 1 2 1 2 6 1 0  EDO 214 C
5 1.52 2.51 33.8 -0.47 0.21 7.9 72 1 2 1 1 6 1 0  EDO 214 C
6 1.12 2.22 24.9 0.42 -0.30 1.8 89 0 0 3 5 0 0 0  
7 1.14 2.32 25.6 0.11 -0.28 5.9 87 1 0 3 6 0 0 0  
8 1.15 1.15 15.4 -0.90 -0.47 14.7 84 1 1 3 4 0 1 0  
9 1.13 1.13 17.9 -0.61 -0.43 12.0 79 1 1 3 4 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer