PDBsum entry 3rug Go to PDB code:  Tunnel analysis for: 3rug calculated with MOLE 2.0 PDB id 3rug Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 3.14 80.1 0.57 0.23 8.4 84 2 3 9 14 8 0 0  DB6 303 A NAG 1 I NAG 2 I 2 1.21 2.98 82.3 0.18 0.16 9.0 77 3 3 9 12 12 0 0  DB6 303 A 3 1.90 2.04 15.3 -1.39 -0.05 6.8 72 2 0 4 1 4 0 0   4 1.68 1.85 18.1 -1.29 -0.03 5.7 71 2 0 4 1 4 1 0   5 1.17 1.39 15.6 1.37 0.49 2.2 78 1 0 0 4 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.