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PDBsum entry 3rub

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3rub calculated with MOLE 2.0 PDB id
3rub
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.85 5.9 -2.61 -0.53 31.6 72 1 2 0 0 1 1 0  
2 1.64 6.9 -1.96 -0.52 25.7 82 1 2 1 0 1 0 0  
3 1.83 5.7 -0.56 0.41 16.4 64 1 1 0 2 1 0 0  
4 1.53 11.1 -0.36 -0.65 2.7 97 0 1 2 1 1 0 0  
5 1.43 10.4 1.46 0.18 4.1 79 0 2 0 4 1 0 0  
6 1.43 12.7 1.77 0.26 3.4 78 0 2 0 6 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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