PDBsum entry 3rmf

Tunnel analysis for: 3rmf calculated with

MOLE 2.0

PDB id

3rmf

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.94

2.16

17.8

-1.69

-0.61

20.6

86

2

1

2

1

0

0

0

20Z 496 A

2

2.08

3.18

18.3

1.03

0.30

14.8

83

2

3

0

4

0

0

0

20Z 496 A

3

1.83

2.78

23.9

2.16

0.90

3.2

68

1

0

0

9

3

1

0

4

1.34

1.34

25.1

0.76

0.12

8.1

76

2

1

1

7

2

0

0

20Z 496 A

5

1.58

1.67

30.8

1.56

0.42

8.6

76

1

3

0

9

2

0

0

20Z 496 A

6

1.59

1.66

32.3

0.71

0.10

9.2

75

1

1

2

8

2

0

0

20Z 496 A

7

1.24

2.28

33.2

1.40

0.61

9.9

78

2

1

1

9

2

1

0

20Z 496 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.