PDBsum entry 3rmd Go to PDB code:  Pore analysis for: 3rmd calculated with MOLE 2.0 PDB id 3rmd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   32 pores, coloured by radius 35 pores, coloured by radius 35 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.41 4.23 38.8 -0.03 0.03 11.7 84 2 2 3 4 2 0 0   2 2.56 2.65 55.9 -2.33 -0.55 33.4 82 9 7 2 2 0 1 0  DG 104 H 3 1.25 1.25 61.8 -1.69 -0.15 25.6 79 7 4 3 2 4 0 0   4 1.25 1.88 61.9 -1.31 -0.18 20.0 79 3 6 2 4 2 1 0   5 2.86 3.03 63.6 -1.91 -0.49 20.0 84 4 4 4 3 1 1 0  DG 2 I DT 3 I CTG 4 I DG 5 I DA 6 I DA 7 I DG 107 J DT 108 J DC 109 J DT 111 J DT 112 J 6 1.45 1.47 70.0 -2.09 -0.48 31.5 78 9 6 0 2 2 0 0  DG 104 H 7 1.31 1.30 71.2 -1.39 -0.41 19.9 80 6 4 5 3 4 1 0  DC 1 I DG 2 I 8 1.24 1.23 71.5 -1.74 -0.21 26.0 79 7 7 3 3 4 0 0  DT 3 K DG 5 K 9 1.90 2.09 73.0 -1.60 -0.24 24.6 79 8 4 3 5 4 1 0   10 1.81 1.81 76.5 -1.92 -0.34 28.7 82 9 7 0 2 2 0 0   11 1.66 2.25 78.1 -1.66 -0.65 23.6 86 8 6 5 4 0 0 0   12 1.31 1.31 84.5 -1.31 -0.34 15.8 79 8 4 4 2 4 2 0  DC 1 I DG 2 I DT 3 I CTG 4 I DG 5 I DA 6 I DA 7 I DG 107 J DT 108 J DC 109 J DT 111 J DT 112 J 13 1.26 1.89 91.1 -1.16 -0.18 20.1 80 7 8 1 5 2 1 0   14 1.50 2.29 96.0 -1.92 -0.54 27.3 83 11 10 4 4 0 1 0   15 1.43 2.32 100.4 -2.56 -0.56 36.1 80 14 8 1 3 2 0 0   16 2.88 3.03 101.5 -1.43 -0.30 20.6 83 6 6 6 7 3 0 0  DG 2 I DT 3 I DTP 2 J DT 112 J DC 113 J DA 114 J DA 115 J 17 1.94 2.34 113.7 -1.15 -0.24 19.3 77 8 7 4 6 4 2 0  DT 3 K DG 5 K DA 6 K 18 1.90 1.91 152.7 -1.24 -0.26 18.4 81 12 6 4 7 3 1 0  DT 3 I CTG 4 I DG 5 I DA 6 I DA 7 I DTP 2 J DG 107 J DT 108 J DC 109 J DT 111 J DT 112 J DC 113 J DA 114 J DA 115 J 19 2.20 5.23 159.5 -1.57 -0.32 21.2 81 13 8 5 7 4 1 0  DT 3 I CTG 4 I DG 5 I DA 6 I DA 7 I DTP 2 J DG 107 J DT 108 J DC 109 J DT 111 J DT 112 J DC 113 J DA 114 J DA 115 J 20 1.33 1.33 168.1 -1.12 -0.23 18.3 81 15 7 6 7 6 1 0  DC 1 I DG 2 I DT 3 I DTP 2 J DT 112 J DC 113 J DA 114 J DA 115 J 21 1.32 1.56 174.4 -1.23 -0.27 17.0 80 11 10 5 10 4 2 0  DT 3 I CTG 4 I DG 5 I DA 6 I DA 7 I DTP 2 J DG 107 J DT 108 J DC 109 J DT 111 J DT 112 J DC 113 J DA 114 J DA 115 J 22 3.08 3.08 28.7 -2.02 -0.49 20.0 78 4 2 3 1 5 0 0   23 1.87 1.87 29.8 -1.87 -0.38 22.9 82 4 2 3 2 2 0 0   24 3.35 3.45 31.4 -0.91 -0.14 11.9 80 2 2 3 3 4 2 0   25 1.31 1.31 31.8 -1.31 -0.16 17.1 77 4 1 1 1 2 0 0   26 1.31 1.31 39.5 -2.00 -0.31 25.0 70 6 2 1 0 3 0 0   27 1.40 1.60 39.8 -1.03 -0.11 20.9 75 3 3 1 3 2 2 0  DT 111 F DT 112 F 28 1.42 3.04 45.0 -1.42 -0.06 23.8 79 7 2 4 2 3 0 0  DT 111 F DT 112 F DC 113 F 29 1.26 1.26 50.9 -1.46 -0.61 16.6 82 4 3 2 1 2 0 0  DA 6 E DA 7 E DT 8 E DG 9 E DA 10 E DG 104 F DT 111 F DT 112 F DC 113 F 30 1.39 1.61 57.6 -1.35 -0.31 20.3 78 5 4 3 4 4 1 0   31 1.54 1.60 58.4 -1.08 -0.54 12.1 85 5 0 4 0 2 1 0  DA 6 E DG 9 E DA 10 E DC 11 E DG 103 F DG 104 F DG 107 F DT 108 F DC 109 F DA 110 F DT 111 F DC 113 F 32 1.62 1.71 124.4 -0.76 -0.19 14.8 85 6 6 5 7 5 1 0  DC 113 F 33 1.82 1.85 54.4 -1.02 -0.14 18.2 82 6 3 4 4 2 0 0  DTP 907 B DA 114 H DA 115 H 34 1.32 2.41 83.9 -2.16 -0.47 30.6 79 10 9 3 3 2 0 1  DTP 907 B DA 114 H DA 115 H 35 1.31 2.51 91.6 -1.94 -0.31 29.9 79 11 6 3 4 2 0 1  DTP 907 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.