PDBsum entry 3rg1 Go to PDB code:  Pore analysis for: 3rg1 calculated with MOLE 2.0 PDB id 3rg1 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   33 pores, coloured by radius 34 pores, coloured by radius 34 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.95 3.12 52.3 -1.53 -0.28 21.5 77 7 4 1 3 1 3 0  NAG 2 R MAN 6 R 2 1.51 1.60 60.6 -2.42 -0.74 23.0 88 3 10 10 1 1 0 0   3 1.86 1.86 63.8 -1.09 -0.30 14.3 76 6 3 5 4 2 5 0  PGT 201 H 4 1.64 1.69 68.2 -2.15 -0.66 11.4 85 6 2 13 1 2 3 0   5 1.88 2.38 72.2 0.67 0.37 11.7 76 5 5 1 14 3 2 1  NAG 2 R MAN 6 R 6 2.58 2.57 73.1 -1.48 -0.65 16.0 92 3 4 9 2 2 1 0   7 2.65 2.89 80.1 -2.14 -0.49 20.4 86 7 4 11 4 1 5 0   8 2.18 2.91 96.8 -1.80 -0.23 24.1 74 9 6 5 5 7 3 0  NAG 1 W NAG 2 W BMA 3 W NAG 1 X NAG 2 X BMA 3 X M AN 5 X MAN 6 X MAN 8 X 9 1.83 1.83 106.2 -1.96 -0.59 19.5 82 11 6 11 3 1 5 0   10 1.59 1.65 109.6 -2.06 -0.70 17.3 87 8 9 16 2 0 4 0   11 1.85 1.86 107.9 -2.01 -0.57 19.8 82 7 6 7 3 2 3 0   12 2.49 3.23 111.4 -2.01 -0.59 15.4 86 10 8 18 2 3 4 0   13 2.56 3.69 112.6 -1.15 -0.16 13.0 83 5 8 11 6 4 5 0  PGT 201 H 14 1.86 2.39 114.9 -0.47 -0.14 13.2 81 6 9 8 14 3 5 1   15 1.58 1.65 115.2 -2.40 -0.71 23.7 89 6 17 15 3 0 1 0   16 1.43 1.55 116.9 -1.94 -0.63 18.4 93 9 10 17 5 0 1 0   17 2.45 3.30 127.6 -2.06 -0.61 15.6 87 9 9 17 2 3 4 0   18 1.45 1.72 137.4 -2.29 -0.66 23.7 87 8 16 16 3 1 2 0   19 1.95 2.90 136.0 -1.34 -0.08 19.3 73 8 14 7 3 10 5 0  PGT 201 H NAG 1 a NAG 2 a BMA 3 a NAG 1 b NAG 2 b BMA 3 b MAN 4 b MAN 5 b MAN 7 b MAN 8 b 20 2.57 2.56 140.3 -1.40 -0.47 16.5 90 8 14 18 8 4 2 0   21 1.74 1.74 143.6 -2.28 -0.60 16.6 85 11 6 28 1 3 6 0   22 2.93 3.72 145.9 -1.71 -0.39 19.4 78 9 7 8 5 4 6 0  PGT 201 H 23 1.56 1.59 165.6 -1.85 -0.68 14.1 93 12 9 30 3 1 3 0   24 1.41 1.76 183.9 -1.49 -0.14 20.6 75 13 14 7 7 9 7 0  PGT 201 L NAG 2 R MAN 6 R NAG 1 c NAG 2 c BMA 3 c NAG 1 d NAG 2 d BMA 3 d MAN 4 d MAN 5 d MAN 6 d M AN 8 d 25 1.67 1.66 201.4 -2.05 -0.63 17.2 91 13 9 32 3 3 3 0   26 2.34 3.23 207.9 -1.60 -0.47 15.1 88 11 17 28 7 7 3 0   27 1.84 1.84 237.3 -1.74 -0.48 19.2 86 16 20 26 10 4 5 0   28 1.38 1.50 246.2 -1.88 -0.32 20.7 84 15 20 26 10 8 3 0  NAG 1 Y NAG 2 Y BMA 3 Y NAG 1 Z NAG 2 Z BMA 3 Z M AN 4 Z MAN 5 Z MAN 6 Z MAN 8 Z 29 1.40 1.54 262.1 -1.87 -0.45 18.7 87 20 20 35 9 5 6 0   30 1.58 1.56 284.7 -1.85 -0.50 18.1 86 19 25 34 9 4 6 0   31 1.35 1.35 26.2 0.72 0.11 2.5 77 1 0 2 6 2 0 0   32 1.19 1.19 29.4 0.64 0.00 2.5 82 1 0 2 4 2 1 0   33 1.33 1.33 25.9 0.31 -0.18 2.7 76 1 0 2 5 1 0 0   34 1.36 1.36 28.8 0.84 0.18 3.6 81 2 0 2 6 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.