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PDBsum entry 3rb5

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3rb5 calculated with MOLE 2.0 PDB id
3rb5
Pores calculated on whole structure Pores calculated excluding ligands

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11 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.58 3.82 27.7 0.09 0.31 7.6 91 1 0 2 4 2 1 0  
2 1.38 1.58 28.4 0.63 0.15 11.7 73 5 1 0 7 0 1 0  
3 1.45 2.97 32.7 -0.44 -0.07 10.6 84 2 2 1 2 2 1 0  SO4 732 A
4 3.21 5.28 35.7 -2.56 -0.69 36.9 84 4 6 0 1 0 0 0  
5 2.23 2.37 48.7 -0.49 -0.14 10.1 88 2 3 3 6 2 1 0  
6 1.45 2.97 60.8 -1.06 -0.44 17.2 86 4 5 2 2 1 1 0  SO4 732 A
7 2.62 2.78 69.2 -1.20 -0.18 22.9 82 4 3 4 7 2 0 0  
8 2.62 2.78 77.3 -1.67 -0.60 23.5 86 4 5 4 5 2 0 0  
9 2.26 2.36 84.5 -1.03 -0.46 14.0 88 3 4 5 6 3 0 0  
10 1.77 2.96 142.4 -0.30 -0.25 11.5 78 2 3 2 4 6 1 0  MPD 4984 A SO4 731 B
11 1.68 2.89 159.4 -0.81 -0.31 17.1 80 6 5 1 4 5 0 0  SO4 731 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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