PDBsum entry 3ral Go to PDB code:  Tunnel analysis for: 3ral calculated with MOLE 2.0 PDB id 3ral Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 1.48 15.9 0.58 -0.03 5.2 71 2 0 1 5 2 0 0   2 1.21 1.21 18.0 0.29 -0.14 6.1 71 2 1 1 5 2 0 0   3 1.72 1.72 18.2 1.48 0.59 7.0 71 1 1 0 5 3 0 0   4 1.62 1.72 22.5 0.97 0.19 11.8 79 1 3 0 5 2 0 0  04Z 499 A 5 1.56 3.45 24.3 2.66 0.88 4.0 76 2 1 0 9 2 0 0   6 1.71 4.70 24.4 1.98 0.79 4.7 72 2 1 0 8 3 1 0   7 1.62 1.72 48.0 -0.47 -0.18 12.7 79 2 5 2 5 3 0 0  04Z 499 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.