PDBsum entry 3r9a

Pore analysis for: 3r9a calculated with

MOLE 2.0

PDB id

3r9a

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

3 pores, coloured by radius

8 pores, coloured by radius

8 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.22

1.29

62.7

-0.10

0.05

5.6

77

3

1

6

9

4

1

1

LLP 209 A

2

1.22

1.30

74.6

-0.25

-0.06

7.2

79

2

2

6

9

4

1

1

LLP 209 A

3

1.89

1.91

78.2

-0.46

-0.26

14.4

79

3

6

8

7

2

1

0

4

1.20

1.30

86.8

-0.15

-0.05

7.4

78

3

1

8

12

3

1

1

LLP 209 A

5

1.90

1.92

101.6

-0.56

-0.18

14.4

79

3

5

10

8

3

2

0

6

3.31

3.47

26.0

-0.58

0.02

10.4

79

3

0

3

3

2

1

0

7

1.25

1.37

50.9

0.12

0.04

3.6

79

2

0

6

11

2

1

1

LLP 209 C

8

1.23

1.35

58.5

-0.04

0.08

4.6

76

3

0

5

11

4

0

1

LLP 209 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.