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Ligand clusters for UniProt code P30405

Ligand clusters for P30405: Peptidyl-prolyl cis-trans isomerase F, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1

Top 6 (of 10) ligand clusters
Cluster 1.
26 ligand types
44 ligands
Cluster 2.
7 ligand types
9 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2biuX  
 

Structures

PDB   Schematic diagram
2biuX    
3r59A    
4j5bA    
4j5dX    
3rdbA    
 more ...

 

 Cluster 1 contains 26 ligand types (of which only 20 are listed. Click for all)

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Ligand Description


 
1. Ligand: DMS × 4
dimethyl sulfoxide
Dimethyl sulfoxide
PDB codes: 2biu(X),


 
2. Ligand: GOL × 5
Glycerol
PDB codes: 3r4g(A), 3r57(A),


 
3. Ligand: 1FP × 4
Piperazine-1-Carbaldehyde
PDB codes: 3rck(X),


 
4. Ligand: MIO × 4
3-Methyl-1,2-Oxazol-5-Amine
PDB codes: 3rda(X),


 
5. Ligand: M3I × 3
5-Methyl-1,2-Oxazol-3-Amine
PDB codes: 3rci(X),


 
6. Ligand: N3M × 3
N-(3-Aminophenyl)acetamide
PDB codes: 3r57(A),


 
7. Ligand: BS4 × 2
N-[(4-Aminophenyl)sulfonyl]benzamide
PDB codes: 3rcf(A),


 
8. Ligand: 3AO × 1
1-(3-Aminophenyl)ethanone
PDB code: 3r59(A).


 
9. Ligand: 4SO × 1
4-Sulfamoylbenzoic acid
PDB code: 3r4g(A).


 
10. Ligand: 53Z × 1
1-(4-Aminobenzyl)-3-[2-Oxo-2-(Pyrrolidin-1-Yl) ethyl]urea
PDB code: 4j58(A).


 
11. Ligand: 5AO × 1
3-(1,3-Oxazol-5-Yl)aniline
PDB code: 3rcl(A).


 
12. Ligand: 5MZ × 1
3-[5-(Chloromethyl)-1,2,4-Oxadiazol-3-Yl]aniline
PDB code: 3rdb(A).


 
13. Ligand: 671 × 1
1-(4-Aminobenzyl)-3-{2-[(2r)-2-(Naphthalen-1-Yl) pyrrolidin-1-Yl]-2-Oxoethyl}urea
PDB code: 4j59(A).


 
14. Ligand: 67Z × 1
1-(4-Aminobenzyl)-3-{2-[(2r)-2-(2,5-Dimethoxyphenyl) pyrrolidin-1-Yl]-2-Oxoethyl}urea
PDB code: 4j5a(X).


 
15. Ligand: 6AI × 1
1h-Indazol-6-Amine
PDB code: 3r56(A).


 
16. Ligand: 6B4 × 1
1-(4-Aminobenzyl)-3-(2-{(2r)-2-[2-(Methylsulfanyl) phenyl]pyrrolidin-1-Yl}-2-Oxoethyl)urea
PDB code: 4j5b(A).


 
17. Ligand: 728 × 1
1-(4-Aminobenzyl)-3-{2-[(2r)-2-(2-Bromophenyl) pyrrolidin-1-Yl]-2-Oxoethyl}urea
PDB code: 4j5d(X).


 
18. Ligand: 7B7 × 1
1-(4-Aminobenzyl)-3-{2-[(2r)-2-(2-Methoxyphenyl) pyrrolidin-1-Yl]-2-Oxoethyl}urea
PDB code: 4j5e(X).


 
19. Ligand: 7I6 × 1
1-(4-Aminobenzyl)-3-[(2s)-4-(Methylsulfanyl)-1-{(2r)-2- [2-(Methylsulfanyl)phenyl]pyrrolidin-1-Yl}-
1-Oxobutan- 2-Yl]urea
PDB code: 4j5c(X).


 
20. Ligand: DMF × 1
Dimethylformamide
PDB code: 3rcg(A).

 + more. Press for full list
 

 

 Cluster 2 contains 7 ligand types

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Ligand Description


 
1. Ligand: 1PE × 2
Pentaethylene glycol
PDB codes: 4o8h(A), 4o8i(A).


 
2. Ligand: P4C × 2
O-Acetaldehydyl-Hexaethylene glycol
PDB codes: 3rcl(A), 3rdb(A).


 
3. Ligand: 1FP × 1
Piperazine-1-Carbaldehyde
PDB code: 3rck(X).


 
4. Ligand: M3I × 1
5-Methyl-1,2-Oxazol-3-Amine
PDB code: 3rci(X).


 
5. Ligand: N3M × 1
N-(3-Aminophenyl)acetamide
PDB code: 3r57(A).


 
6. Ligand: P33 × 1
3,6,9,12,15,18-Hexaoxaicosane-1,20-Diol
PDB code: 3r56(A).


 
7. Ligand: Q8A × 1
Quinolin-8-Amine
PDB code: 3r49(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: CIT × 1
Citric acid
PDB code: 2z6w(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: 4SO × 1
4-Sulfamoylbenzoic acid
PDB code: 3r4g(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: PEG × 1
Di(hydroxyethyl)ether
PDB code: 3rd9(X).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: MIO × 1
3-Methyl-1,2-Oxazol-5-Amine
PDB code: 3rda(X).

 

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