spacer
spacer

PDBsum entry 3r0h

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3r0h calculated with MOLE 2.0 PDB id
3r0h
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
26 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.74 1.89 29.1 -0.18 -0.26 14.4 77 5 1 0 7 0 1 0  
2 1.92 2.09 30.5 -0.95 -0.47 9.7 88 3 2 2 2 0 1 0  
3 1.21 1.34 41.2 -2.35 -0.22 25.2 81 5 3 4 1 2 1 0  
4 1.22 1.36 41.1 -1.22 -0.17 15.9 79 5 3 3 2 2 1 0  
5 2.41 2.61 41.5 -1.98 -0.25 27.5 75 7 5 0 2 0 4 0  
6 1.55 2.48 64.4 -1.73 -0.38 20.7 77 7 5 6 3 4 4 0  DTT 3 B
7 1.72 1.88 68.2 -1.47 -0.30 16.3 74 7 5 5 5 5 5 0  DTT 3 B
8 2.91 3.07 74.0 -2.01 -0.50 19.6 76 10 5 4 2 2 4 0  
9 2.92 3.00 75.6 -2.19 -0.54 20.3 76 6 3 6 2 2 2 0  
10 1.51 1.56 76.3 -0.91 -0.23 15.3 74 8 6 3 10 5 6 0  DTT 5 A
11 1.58 1.61 79.0 -1.82 -0.45 20.0 77 11 7 5 4 2 5 0  DTT 5 A
12 1.79 1.96 79.9 -1.34 -0.28 17.8 77 8 6 5 8 3 5 0  
13 2.80 2.86 82.7 -2.00 -0.61 16.6 83 10 4 9 2 0 2 0  
14 1.49 1.57 87.9 -1.49 -0.38 15.2 74 10 5 4 4 3 7 0  DTT 5 A
15 1.30 1.41 89.4 -1.39 -0.41 11.9 75 7 3 7 4 4 4 0  
16 1.49 1.59 90.6 -1.89 -0.40 17.0 75 8 6 9 3 7 5 0  DTT 5 A DTV 2 B DTT 1 D DTT 4 D
17 1.42 1.41 91.0 -1.63 -0.40 15.8 77 9 5 7 4 2 5 0  DTT 5 A
18 1.47 1.54 97.9 -1.74 -0.41 15.8 73 8 7 8 5 8 7 0  DTT 5 A DTV 2 B DTT 3 B DTT 1 D DTT 4 D
19 1.69 1.88 96.0 -1.70 -0.36 16.0 73 10 9 8 4 7 7 0  DTV 2 B DTT 3 B DTT 1 D DTT 4 D
20 1.79 1.96 95.9 -1.32 -0.33 17.2 77 7 5 7 8 3 5 0  
21 1.62 2.44 100.6 -2.30 -0.44 20.4 76 9 8 11 1 6 5 0  DTV 2 B DTT 1 D DTT 4 D
22 1.50 2.39 105.2 -1.40 -0.39 14.6 73 8 7 8 5 7 8 0  DTT 3 B
23 1.96 3.16 107.9 -2.08 -0.44 18.4 74 8 9 10 3 7 6 0  DTV 2 B DTT 1 D DTT 4 D
24 1.72 1.89 109.7 -1.62 -0.42 14.9 72 9 8 7 4 7 8 0  DTV 2 B DTT 3 B DTT 1 D DTT 4 D
25 1.46 1.45 112.7 -1.73 -0.42 15.5 74 8 8 10 4 6 6 0  DTT 5 A DTV 2 B DTT 3 B DTT 1 D DTT 4 D
26 1.50 2.50 115.8 -2.30 -0.50 19.3 77 7 6 13 1 5 5 0  DTT 5 A DTV 2 B DTT 1 D DTT 4 D
27 1.96 3.12 123.1 -2.11 -0.49 17.7 75 7 7 12 3 6 6 0  DTT 5 A DTV 2 B DTT 1 D DTT 4 D
28 1.44 2.43 132.7 -1.62 -0.40 13.4 72 9 8 11 5 10 10 0  DTT 5 A DTV 2 B DTT 1 D DTT 4 D
29 1.43 2.41 142.7 -1.83 -0.42 15.2 74 9 10 13 3 9 8 0  DTV 2 B DTT 1 D DTT 4 D
30 1.47 2.40 157.8 -1.85 -0.48 15.3 74 8 8 15 3 8 9 0  DTV 2 B DTT 1 D DTT 4 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer