PDBsum entry 3r05

Pore analysis for: 3r05 calculated with

MOLE 2.0

PDB id

3r05

Pores calculated on whole structure

Pores calculated excluding ligands

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15 pores, coloured by radius

14 pores, coloured by radius

14 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.28

1.28

32.4

-1.27

-0.61

9.9

83

1

3

4

2

1

0

0

2

2.00

2.20

43.6

-1.00

-0.15

11.1

77

2

4

7

6

5

0

2

3

1.39

3.12

48.7

-2.22

-0.46

17.0

86

4

4

6

2

2

1

0

4

1.24

1.40

53.4

-0.73

-0.38

11.4

79

5

2

4

3

0

3

1

5

1.25

1.39

55.9

-1.28

-0.46

14.3

79

6

4

5

4

1

3

1

6

1.56

2.93

81.3

-1.61

-0.43

18.2

88

5

11

10

9

1

1

0

7

1.91

2.16

136.7

-1.73

-0.36

16.4

85

6

12

12

9

5

2

0

8

1.21

1.21

156.7

-1.52

-0.39

20.4

84

13

11

8

9

3

3

2

9

2.01

2.21

158.0

-2.00

-0.46

21.9

85

10

14

10

5

4

3

0

10

1.75

2.11

159.3

-1.11

-0.31

12.2

86

7

9

19

13

3

4

2

NAG 1 D NAG 2 D

11

1.77

1.97

170.4

-1.61

-0.46

14.4

85

9

8

18

8

4

5

2

NAG 1 D NAG 2 D

12

1.78

1.98

174.9

-1.21

-0.35

12.3

88

9

10

22

14

3

3

2

NAG 1 D NAG 2 D

13

1.63

2.12

183.9

-1.62

-0.48

16.8

89

12

9

18

10

2

3

2

NAG 1 D NAG 2 D

14

1.83

1.95

251.7

-1.59

-0.39

16.0

86

14

13

22

10

6

5

2

NAG 1 D NAG 2 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.