spacer
spacer

PDBsum entry 3qyu

Go to PDB code: 
Top Page protein tunnels links
Tunnel analysis for: 3qyu calculated with MOLE 2.0 PDB id
3qyu
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.28 8.4 -0.95 -0.73 5.2 89 1 0 1 1 0 1 0  
2 2.22 8.4 -1.19 -0.77 10.5 94 1 0 2 0 0 0 0  
3 2.24 8.4 -0.93 -0.73 5.2 89 1 0 1 1 0 1 0  
4 2.24 8.6 -1.45 -0.76 12.8 94 1 0 2 0 0 0 0  
5 2.29 9.4 -1.12 -0.76 5.0 89 1 0 1 1 0 1 0  
6 2.18 9.8 -1.42 -0.78 11.4 94 1 0 2 0 0 0 0  
7 1.45 3.0 0.04 -0.18 6.7 77 0 1 0 3 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer