PDBsum entry 3qti Go to PDB code:  Tunnel analysis for: 3qti calculated with MOLE 2.0 PDB id 3qti Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.19 25.4 -0.19 0.15 15.5 74 2 2 1 2 5 1 0   2 1.17 1.19 38.6 0.01 0.06 9.4 78 4 3 5 7 5 3 0   3 1.26 1.36 22.7 0.41 0.22 4.6 79 2 2 1 9 3 1 0  3QT 1 B 4 1.25 1.37 40.0 -0.05 0.19 11.0 75 4 6 1 11 6 2 0  3QT 1 B 5 1.18 1.45 86.1 -1.46 -0.29 17.8 80 10 8 10 10 6 3 0  3QT 1 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.