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PDBsum entry 3qrb

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protein ligands metals Protein-protein interface(s) links
Cell adhesion PDB id
3qrb

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
213 a.a.
Ligands
EDO ×4
PGE ×2
Metals
_CA ×6
Waters ×903
PDB id:
3qrb
Name: Cell adhesion
Title: Crystal structure of e-cadherin ec1-2 p5a p6a
Structure: Cadherin-1. Chain: a, b. Fragment: cadherin 1 and cadherin 2 domains, unp residues 157-369. Synonym: arc-1, epithelial cadherin, e-cadherin, uvomorulin. Engineered: yes. Mutation: yes
Source: Mus musculus. Mouse. Organism_taxid: 10090. Gene: cdh1. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
1.80Å     R-factor:   0.162     R-free:   0.178
Authors: X.Jin,L.Shapiro
Key ref: J.Vendome et al. (2011). Molecular design principles underlying β-strand swapping in the adhesive dimerization of cadherins. Nat Struct Biol, 18, 693-700. PubMed id: 21572446
Date:
17-Feb-11     Release date:   18-May-11    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
P09803  (CADH1_MOUSE) -  Cadherin-1 from Mus musculus
Seq:
Struc:
 
Seq:
Struc:
884 a.a.
213 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 

 
Nat Struct Biol 18:693-700 (2011)
PubMed id: 21572446  
 
 
Molecular design principles underlying β-strand swapping in the adhesive dimerization of cadherins.
J.Vendome, S.Posy, X.Jin, F.Bahna, G.Ahlsen, L.Shapiro, B.Honig.
 
  ABSTRACT  
 
Cell adhesion by classical cadherins is mediated by dimerization of their EC1 domains through the 'swapping' of N-terminal β-strands. We use molecular simulations, measurements of binding affinities and X-ray crystallography to provide a detailed picture of the structural and energetic factors that control the adhesive dimerization of cadherins. We show that strand swapping in EC1 is driven by conformational strain in cadherin monomers that arises from the anchoring of their short N-terminal strand at one end by the conserved Trp2 and at the other by ligation to Ca(2+) ions. We also demonstrate that a conserved proline-proline motif functions to avoid the formation of an overly tight interface where affinity differences between different cadherins, crucial at the cellular level, are lost. We use these findings to design site-directed mutations that transform a monomeric EC2-EC3 domain cadherin construct into a strand-swapped dimer.
 

 

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