PDBsum entry 3qny Go to PDB code:  Tunnel analysis for: 3qny calculated with MOLE 2.0 PDB id 3qny Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 1.57 17.1 -0.57 -0.44 6.8 91 0 2 3 3 0 0 0   2 1.31 1.55 29.5 -0.78 -0.49 8.5 92 1 1 5 4 0 1 0   3 1.31 1.46 30.6 -0.57 -0.43 7.7 92 1 1 5 4 0 1 0   4 1.37 1.37 15.1 -0.38 -0.07 19.1 82 2 2 1 6 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.