spacer
spacer

PDBsum entry 3qmo

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) clefts links
Cleft analysis for: 3qmo PDB id
3qmo
View options
Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 13149.00 1.18 78.76 3 14.32 2 20.18 1 44 33 59 43 32 38 10 GOL 1[A], GOL 7[A], NAG 671[A], N
AG 672[A], GOL 2[B], GOL 3[B], G
OL 4[B], HEM 619[B], NAG 671[B], N
AG 672[B] (111 atoms)
2 11142.56 0.00 72.23 4 14.02 3 16.46 2 31 18 42 33 24 22 3  
3 2996.58 0.00 72.20 5 12.88 4 13.89 3 9 4 13 17 9 2 0 GOL 6[A], HEM 620[A] (49 atoms)
4 2776.78 0.00 60.79 9 7.70 6 10.54 5 10 5 17 8 9 5 0  
5 2812.64 0.00 62.09 7 7.25 7 10.57 4 10 5 16 7 6 4 0  
6 617.62 0.00 97.54 1 15.40 1 0.00 9 3 0 3 13 6 1 0 NS4 619[A] (21 atoms)
7 613.83 0.00 96.65 2 12.07 5 0.00 10 3 0 3 13 7 1 0 NS4 1[B] (21 atoms)
8 740.81 0.00 62.11 6 7.14 8 7.45 7 5 4 2 4 0 5 0 BOG 703[A](1 atom)
9 747.14 0.00 61.88 8 6.67 9 6.37 8 4 7 3 3 1 3 1  
10 602.02 0.00 60.40 10 6.47 10 7.59 6 4 4 1 4 0 4 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
spacer
spacer