PDBsum entry 3qla Go to PDB code:  Tunnel analysis for: 3qla calculated with MOLE 2.0 PDB id 3qla Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.57 16.8 -0.72 -0.43 9.7 83 2 2 2 2 2 0 0  M3L 9 C 2 1.48 1.51 15.7 0.95 -0.21 1.8 89 0 0 1 5 0 0 0   3 1.52 1.55 26.7 1.01 0.01 4.4 88 1 0 2 6 1 0 0   4 1.51 1.54 27.9 1.01 0.11 4.9 88 1 0 2 6 1 0 0   5 1.13 1.13 17.6 -0.12 0.15 7.3 75 3 0 2 2 2 0 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.