PDBsum entry 3qkt

Pore analysis for: 3qkt calculated with

MOLE 2.0

PDB id

3qkt

Pores calculated on whole structure

Pores calculated excluding ligands

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13 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.43

1.48

31.3

-0.33

0.00

11.2

71

3

2

1

2

2

1

0

ANP 901 A

2

2.14

3.08

62.2

-2.19

-0.61

28.1

82

8

7

4

3

2

0

0

3

1.40

1.40

67.6

-2.04

-0.54

21.5

84

9

7

8

1

4

0

0

ANP 901 B MG 902 B

4

1.76

1.76

67.5

-2.15

-0.65

21.8

81

8

5

9

2

4

1

0

ANP 901 C

5

1.39

1.40

74.6

-1.82

-0.48

21.2

80

10

6

6

4

5

0

0

ANP 901 B MG 902 B

6

1.74

1.86

104.8

-2.35

-0.63

27.4

81

12

7

7

5

3

2

0

7

1.95

2.29

106.4

-2.40

-0.70

29.9

77

8

13

2

3

1

0

0

8

2.10

2.10

130.1

-2.47

-0.74

30.7

81

12

16

5

2

1

0

0

9

1.69

2.08

138.7

-2.56

-0.65

31.9

82

18

13

7

2

3

2

0

10

1.69

2.11

140.5

-2.56

-0.62

32.0

80

20

12

4

4

3

3

0

11

1.57

1.58

143.5

-2.34

-0.62

28.5

81

16

14

9

2

4

1

0

ANP 901 A

12

1.40

1.40

154.6

-2.33

-0.64

27.5

80

12

17

9

3

4

0

0

ANP 901 B MG 902 B

13

1.53

1.55

157.7

-2.35

-0.59

29.1

79

18

15

7

5

5

2

0

ANP 901 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.